Caenorhabditis elegans (nematode): CELE_F31E3.4
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Entry
CELE_F31E3.4 CDS
T00019
Symbol
panl-2
Name
(RefSeq) PAN (PolyA-specific riboNucLease) subunit
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CELE_F31E3.4 (panl-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_F31E3.4 (panl-2)
Enzymes [BR:
cel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
CELE_F31E3.4 (panl-2)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CELE_F31E3.4 (panl-2)
mRNA degradation factors
3'-5' decay
Pan complex
CELE_F31E3.4 (panl-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
RNase_T
UCH_1
WD40_like
zf-CCCH_2
BING4CT
Motif
Other DBs
NCBI-GeneID:
175974
NCBI-ProteinID:
NP_498519
WormBase:
WBGene00017951
Ensembl:
WBGene00017951
UniProt:
P53015
LinkDB
All DBs
Position
III:complement(6963620..6968130)
Genome browser
AA seq
1131 aa
AA seq
DB search
MASATTNQGNEWRFVAPININTTTENTVSCVKFDPHEDLFWIGSSTGKVTSLLPTNHFTR
YSAFVVSNISGVHSLEPTESLIFTLSDTMLRATTRQGIPVAKFTSPSMTKMAASCHMPGT
STFIMGGFQEKLIHYDFVKEKEIRTTELKASENAIIIRYNGTNTFTADTRGNVFVKNSKN
CETIHTLDCHQDQVLDFDVQGNKLITCGVSMNRLKNMDQFIKVYDLRMYKALSPIGMPYL
PQFARFMPSYCERVCVTYQTMYNQPGQTATWSNHPAGVKMFDLNSNGNSAEFPIETSLIS
AFDFSSNKNFIAVGNHCGIVNVFADRDQPQVNENSKETVFAAPPVQPPLSFAIDDTTQTF
GSIPLGFSQEPLVSDWPTELTQIVYRRRKPPTEQTNVKSIHYLSQIKNPRINSKLKRHNI
VPYFFEQEELIEASNDHGSKEEAPQEMKRIKVSKLYKKRPLIVNQVPARRGNSQDETQET
YTWNIIRHVTMQSTHGMNLVANTLVQVAYSLSPIRSIVLRHICTEDSCITCELHFLFTAF
SSKIGDNSGMLTNNLAWALARNGVSLKAGGVLSATQQIIKTVIDDVARTDASGSICSKFD
RHLRCIRCRGLQQQESVTDHLLKLNYAPVYQASLCQLIEKSLHIGDDSGEIECEDCKQMS
RMECKRKVRELSPVLLIDTNASSNGFVEFWRRQLSLFERKPGGNRSSALGTVPESPSEKK
NCRFGTDCRNKKTCKFVHGLVDWPAEQTKLLEDVDLPEWAHYIPSRIAAQLCEGIVRLSD
VSDLPDYDEPSAVIYELDAMIHAVGNGENDVNWTHPVTLLRESPVISSSWTLINEQLVSR
LHDHEARHIDGRWKLPALLAYKKKNFDVKTSEDIISNDLFLAEENLASNGMTSLAVQSLE
ELPKEKELVGLDAEFIKIKTDLLEFDGKTVQMRAVGRASCVDSTGERIIFDDHVKLTDDV
EVVDYLTKFSGIVKADLCPTTSEKYLTTHKRLLLRMHVLIQRGVTFVGHALHNDFTVLNV
HVAESQIIDTVTLMRLGTQRMLSLQFLVKEILGETIQMEAHDSVVDARYALKLYRKYLEI
KEQGLLGSEMRRIYTILPCPSPNQTSSPLVVSTTRKTPEDTNPADAAPKSV
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggcaactactaaccaaggaaatgagtggcgatttgtggcgccgatcaatatc
aacacgaccactgaaaatactgtatcatgtgtaaaatttgacccacatgaagatttattt
tggataggatcttctacgggaaaagtgacatctctgctacccaccaaccacttcacacgt
tattccgcgttcgtcgtatcgaacattagcggggttcacagtctagagcctactgaaagt
ttgattttcacattgagtgatacaatgctgcgcgcaacgacgcggcaaggaattccagtg
gcgaagtttacatcaccatcaatgacaaaaatggcagcttcttgtcacatgcccggaacg
tcaacgtttataatgggaggatttcaagagaagctgattcactatgattttgtgaaagag
aaagaaattcgaaccactgaactgaaggcatcggaaaatgccattattatcagatataat
ggcacaaacacgttcaccgctgacacgagaggaaacgtttttgtgaaaaactcgaaaaat
tgcgaaacgatccacacactagactgtcatcaggaccaagttctagattttgatgtacaa
ggcaacaagttgatcacatgcggagtttcaatgaatcgtctaaagaacatggatcagttc
ataaaagtttacgatctccgaatgtacaaggcgttgagtccgattggaatgccctatcta
ccacagttcgcaagatttatgccgtcttactgtgaacgcgtctgtgttacatatcaaacg
atgtacaatcagcctggccagactgcaacttggtcgaatcatcctgccggtgtcaaaatg
tttgatttgaattcaaatggaaatagtgccgaattccctatcgagacgtctttaatatcg
gcattcgatttttcatcgaataaaaatttcattgccgtcggaaatcactgtggaatagtc
aacgttttcgccgatcgagatcagccacaagttaatgaaaactcaaaggagacggttttc
gccgcaccaccggtccagccacctctctcattcgctatcgacgacactacacaaacgttt
ggttcgattcctctaggattttcacaagaaccacttgttagtgattggccgacagaattg
acgcaaattgtgtataggcgacgaaagcctcctactgaacagacgaatgtaaaatcgatt
cattatttgtcacaaataaaaaatccccgaattaattcgaagctgaagcgccacaatatt
gttccttactttttcgagcaggaggaactgattgaagcatccaacgatcatggatctaag
gaagaagctccacaggaaatgaagagaattaaagtttcaaaactgtacaagaagcgccct
ctaattgtcaatcaagtaccggctagacgtggaaactctcaagacgagacgcaagagaca
tacacgtggaacatcattcgacatgtaacaatgcagtcaacacatggaatgaatctagtg
gctaacactcttgtccaagttgcatactcgttgtcaccaattcgtagcatcgttttacgt
catatctgcacagaagactcatgtatcacctgcgagcttcactttctcttcactgcattt
tcatcaaaaattggggacaacagtggaatgctgacaaacaatttggcttgggctcttgca
cgaaatggagttagcttgaaggctggaggagtattgagtgctacacagcaaatcatcaag
acagtgatcgatgatgtcgctcgaacagatgcttcgggttcaatttgctcaaagttcgat
cgtcatctccgatgtattcgttgtcggggactccagcagcaagaatctgtcacggatcat
cttctcaaactaaactatgctccagtttatcaagcatcgctttgccaacttattgaaaag
tcattgcatatcggagatgattctggagaaattgagtgtgaagactgcaagcagatgagc
cgaatggagtgtaagagaaaagttcgggagctctcccccgttcttctaattgacacaaac
gcttcatcgaatggatttgttgagttttggcgtcggcaattatctctctttgaacgaaaa
ccaggaggcaatcgaagttctgcattaggaacggtgccagagtcaccttctgagaagaaa
aattgcagatttggaacggattgtcgcaacaagaaaacatgcaagtttgttcatggactc
gtcgattggcctgcagaacagacaaaacttcttgaagacgtggatttaccagagtgggca
cactacattccatccagaatcgctgctcaactttgcgaggggattgttcgtttgtctgat
gtttcggatctcccagactatgatgagccgtctgctgtgatttatgagcttgatgcgatg
attcatgctgttggtaatggagaaaacgatgtaaattggactcatccagttacattgttg
agagaaagtcccgttatttcatcgtcctggactttaatcaatgagcagctagtgagccga
ttgcatgatcatgaagcaaggcacatagacggaagatggaaacttcccgcgcttttggct
tataaaaagaagaacttcgatgtgaaaacgagtgaggatattatttccaatgatttgttc
ctcgcggaagaaaatttggcgagcaacgggatgacgtcattggccgttcaatcattggaa
gagctgccgaaagagaaggaattagtcggtttggatgcagagtttataaagattaagacc
gatctacttgaattcgacggaaaaaccgtgcagatgagagcagttggtcgagcctcctgt
gtcgactcgacaggcgaaaggatcatattcgacgatcacgtgaagctcactgatgacgta
gaagttgtcgactatctcacgaagtttagtggaatcgtgaaagctgatctgtgtccaacg
acttccgagaaatacttgacaacccacaagcggcttcttctacgaatgcatgttttgatt
caacgaggagtcacatttgtaggacacgctctgcataatgatttcacagtgctcaatgtg
catgtggcagaatcacagataatcgacacagtgactctgatgcgtcttggcacccagaga
atgttatcattgcagtttctggttaaggagattcttggcgaaactatacaaatggaagct
cacgactcggtggttgatgcgagatatgcactgaagctgtaccgaaaatatctggaaatc
aaagagcaaggacttctgggttcagaaatgcgtcgaatctacactattctcccgtgtcca
tcgccaaaccaaacatcgtcacctctggttgtatctactacacgaaaaactccagaagat
acgaatccagcagatgctgcaccgaagtcggtttaa
DBGET
integrated database retrieval system
