KEGG   Cellulosimicrobium sp. TH-20: B8281_10560Help
Entry
B8281_10560       CDS       T04804                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cet  Cellulosimicrobium sp. TH-20
Pathway
cet03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cet00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    B8281_10560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cet03400]
    B8281_10560
Enzymes [BR:cet01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B8281_10560
DNA repair and recombination proteins [BR:cet03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     B8281_10560
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ARK05108
UniProt: A0A1W6DQD0
LinkDB All DBs
Position
complement(2397923..2400607)
Genome map
AA seq 894 aa AA seqDB search
MATTSSRAGETVNVGGHRLRLTNLDKVLYPATGTTKADVLAYLAAVADVMLPHCANRPAT
RKRWPDGVDGQVFFQKNAGQGVPSWVRTRRIQHKSSANDYVLVNDLATLTWLGQTASLEL
HVPQWQFGRTGAHLDPDRLVLDLDPGPGAGLAECAEVARQARQILQGMGLEPLPVTSGSK
GIHLYAALDGKQDAAAVSAVAHELARYLEAEHPDLVVSDMKKSLRGGKVLVDWSQNNGNK
TTIAPYSLRGREHPTVAAPRTWEELDDPDLRHLDLDEVVERVRTLGDPLAALTQGHLSAL
EPTPARMATFERKGGAASGGDAADGGTDDERPDRLHRYRSMRDAGRTPEPVPDEAPPPSA
GNSFVIQEHHARRLHWDFRLEHDGVLVSWALPRGEPTDPKKNHLAVQTEDHPLAYGSFEG
TIPKGEYGAGEVTIWDAGTYELEKWRDGEEVIVTLHGEQHGTRRLALIHTGGRDGRDEDN
WLIHLMAPRPSRPGESARGRGAGGGEEAPGLPSAARPSPLPPDPPRPGTSSPPPASRSAR
GASSPDHDDTPEPRPARTDWRPMLASPASAGDLHDGDAWAFEMKWDGFRTLAHVSEGRVR
LVSRSGKDMSVTYPELQALAEQVPAEALPVVLDGEIVALDARGRPSFRRLQQRANIAKPG
DVAAARRRVTVDLMVFDVLETGGRSLAKRPYDERREVLEDVLRDAVAPVHVPPVFDGDLE
AAMETSRRLGLEGVVAKRRDGTYSSGRRSALWLKLKHAQSQEVVVVGWRPGHGERTHLVG
SLLLAVPDDGRLVYVGRVGSGFTDAERRDLVAELDRIGRTTPPAVGVPREDARDAHWVSP
RRVAEVVYAEWTGAGEGDGDDVPFGKLRHPVWKGWRRDKSPDDVVLETPATVEG
NT seq 2685 nt NT seq  +upstreamnt  +downstreamnt
atggccaccacatccagccgggcgggcgagacggtgaacgtcggtggtcaccgcctgcgc
ctcaccaacctggacaaggtcctctaccccgccaccggcacgacgaaggccgacgtcctc
gcgtacctcgcggccgtcgccgacgtcatgctcccccactgcgcgaaccggcccgcgacg
cgcaagcggtggcccgacggcgtcgacggccaggtgttcttccagaagaacgcgggccag
ggcgtcccgtcctgggtgcgcacgcgacgcatccagcacaagagcagcgccaacgactac
gtgctggtgaacgacctcgcgaccctcacgtggctcggccagacggcgtcgctcgagctc
cacgtcccgcagtggcagttcggtcgcaccggggcgcacctcgaccccgaccgcctcgtc
ctcgacctcgaccccggcccgggggccgggctggccgagtgcgcggaggtcgcgcgccag
gcgcggcagatcctccagggcatgggcctcgaacccctgcccgtgacgagcgggtccaag
ggcatccacctgtacgccgcgctcgacggcaagcaggacgcggcggccgtctccgccgtc
gcgcacgagctcgcccgctacctcgaggccgagcaccccgacctcgtcgtgagcgacatg
aagaagtcgctgcgcggcggcaaggtgctcgtggactggagccagaacaacggcaacaag
acgacgatcgcgccctactcgctgcgcgggcgcgagcaccccaccgtcgcagcgccccgc
acctgggaggagctcgacgacccggacctgcgccacctcgacctcgacgaggtcgtcgag
cgcgtgcgcaccctgggcgacccgctcgccgcgctcacgcaggggcacctctccgcgctc
gagcccacgcccgcgcgcatggcgacgttcgagcgcaaggggggtgcggcgtcgggcggc
gacgccgcggacggcgggacggacgacgagcggcccgaccgcctgcaccggtaccgctcc
atgcgcgacgccgggcgcacgcccgagcccgtcccggacgaggcgccgccgccgagcgcg
ggcaacagcttcgtcatccaggagcaccacgcccgccgcctgcactgggacttccggctg
gagcacgacggcgtgctcgtgagctgggcgctcccgcgcggcgagccgaccgacccgaag
aagaaccacctcgccgtccagaccgaggaccacccgctcgcctacggctcgttcgagggc
acgatcccgaagggcgagtacggcgccggcgaggtgaccatctgggacgccggcacgtac
gagctcgagaagtggcgcgacggcgaggaggtcatcgtcacgctccacggcgagcagcac
ggcacccgccgcctcgcactcatccacacgggcggccgcgacggccgcgacgaggacaac
tggctgatccacctcatggcgccgaggccgagccgtccgggcgagagcgcgcggggtcgg
ggcgccgggggtggggaggaggcgccgggtctaccatccgcggctcgtccctcgccgctc
ccgccagacccgccacgacccggcacctcctccccacccccggcttcgcggtcggctcgc
ggcgcgtcctcgcccgaccacgacgacacgccggagccacggcccgcgcggacggactgg
cggccgatgctcgcgtcgcccgcgtcggcgggcgacctgcacgacggcgacgcgtgggcg
ttcgagatgaagtgggacgggttccggacgctcgcgcacgtgtccgaggggcgcgtgcgg
ctcgtgagccgctcgggcaaggacatgtcggtgacgtacccggagctgcaggcgctcgcg
gagcaggtcccggccgaggcgctgccggtggtgctggacggggagatcgtcgcgctcgac
gcgcgggggcggccgagcttccggcgtctccagcagcgcgcgaacatcgccaagccgggg
gacgtcgccgcggcgcgacggcgcgtcacggtcgacctcatggtgttcgacgtcctggag
accggcgggcggtcgctcgcgaagcgcccgtacgacgagcggcgcgaggtgctggaggac
gtgctgcgcgacgccgtcgccccggtgcacgtgccgccggtcttcgacggggacctggag
gccgcgatggagacgtcgaggcggctcgggctcgagggcgtcgtcgcgaagcggcgcgac
gggacgtactcgtcggggcgccgctcggcgctgtggctgaagctcaagcacgcgcagtcg
caggaggtcgtcgtggtcgggtggcggccgggccacggcgagcggacgcacctcgtcggg
tccctgctgctcgccgtgcccgacgacggccgcctcgtctacgtgggccgggtcgggtcg
ggcttcacggacgccgagcggcgtgacctggtcgccgagctcgaccggatcggtcgcacg
acgccgcccgcggtgggcgtgccgcgcgaggacgcgcgcgacgcgcactgggtgtcgccg
cggcgggtcgcggaggtcgtctacgccgagtggacgggcgccggggagggcgacggcgac
gacgtcccgttcggcaagctgcgccaccccgtgtggaaggggtggcgccgggacaagtcg
ccggacgacgtcgtgctggagacgcccgcgacggtcgagggctga

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