Canis lupus familiaris (dog): 478835
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Entry
478835 CDS
T01007
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain isoform X1
KO
K19720
collagen type III alpha
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa04611
Platelet activation
cfa04820
Cytoskeleton in muscle cells
cfa04926
Relaxin signaling pathway
cfa04933
AGE-RAGE signaling pathway in diabetic complications
cfa04974
Protein digestion and absorption
cfa05146
Amoebiasis
cfa05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
478835 (COL3A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
478835 (COL3A1)
09152 Endocrine system
04926 Relaxin signaling pathway
478835 (COL3A1)
09154 Digestive system
04974 Protein digestion and absorption
478835 (COL3A1)
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
478835 (COL3A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
478835 (COL3A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
478835 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cfa00536
]
478835 (COL3A1)
Glycosaminoglycan binding proteins [BR:
cfa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
478835 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
DLH
Motif
Other DBs
NCBI-GeneID:
478835
NCBI-ProteinID:
XP_851009
Ensembl:
ENSCAFG00000014812
VGNC:
39472
UniProt:
A0A8C0MYN9
A0A8I3P6Q4
LinkDB
All DBs
Position
36:30394214..30431773
Genome browser
AA seq
1465 aa
AA seq
DB search
MTSFVQKGTWLLLALLQPAVISAQQQAIDGGCSHLGQSYADRDVWKPEPCQICVCDSGSV
LCDDIICDEQELDCPNPEIPFGECCAVCPQPPTSPPRPPNGHGPQGPKGDPGPPGIPGRN
GDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQFESYDVKAGVAGGGIGGYPGPAGPPG
PPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRPGRPG
ERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMG
PRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG
SNGSPGQRGEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPG
TNGAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPG
AAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPRGAPGEPGRDGVPGGPGMRGMPG
SPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG
GPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPG
PKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPRGGAGPPGPEGGKGAAGPPGPPGSAG
TPGLQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGPRGPTGPIGPPGPAGQPGDKG
EGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPG
VAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNNGNPGPPGSSGAPG
KDGPPGPPGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAPGPLGIAGITGARGLAG
PPGIPGPRGSPGPQGVKGENGKPGPSGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG
LPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSGAPGPAG
SRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQGAIGSPGPAGPRG
PVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGG
AAALAAAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSVSGQIESLVSPDGSRKHPARN
CRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNASPGSVPRKNWWTDSGA
EKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMDH
ASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGKTVFEYRTRKAVRLPI
IDIAPYDVGGPDQEFGVDVGPVCFL
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atgacgagctttgtgcaaaaggggacctggttgcttctcgctctgcttcagcccgctgtc
atctcggcacagcagcaagctattgatggaggatgctcccatcttggtcagtcctatgcg
gatagagatgtctggaagccagaaccgtgccaaatatgcgtctgtgactcaggatctgtt
ctctgcgatgacataatatgtgacgaacaagaattagactgtcccaacccagagatccca
tttggagaatgttgtgcagtttgcccacagcctccaacatctcctcctcgccctcctaat
ggtcatggacctcaaggccctaagggagatccaggccctcctggtattcctgggagaaat
ggcgaccccggtattcccggacagccaggctcccctggttctcctggcccccctggaatc
tgtgaatcctgccctactggtcctcagaactattctccccagttcgagtcctatgacgtc
aaggctggtgtcgcaggaggcggcatcggaggctaccccgggccagctggtccccctggt
cctcctggtccccctggtacatctggtcatcctggctccccgggttccccaggataccaa
ggcccccctggtgagcctgggcaagctggtcctgcgggccctccaggaccccctggtgct
atgggtccatctggtcctgctggaaaagatggggaatcaggaagacctggacgacctgga
gagcgagggctgcctggacctccaggtatgaaaggtccagctggcatgcctggattcccc
ggtatgaaaggacatagaggctttgatggacgaaatggagaaaagggtgatacaggtgct
cctggattaaagggtgaaaatggcctcccaggtgaaaatggagcccccggacccatgggt
ccccgaggtgctcctggtgagcgaggacggccaggcctccccggggccgcgggtgctcga
ggtaacgatggtgctcgtggaagtgacggacaaccaggccctcccggtccccctggaact
gcaggattccccggttcccctggtgctaagggtgaagttggacccgcgggatctcctggt
tcaaacggctcccctggacaaagaggagaacctggacctcagggacatgctggtgctcca
ggccctcctggcccccctgggagcaatggtagtcctggcggtaaaggtgaaatgggtccc
gctggcattcctggagcccctggactgataggagcccggggccctcctggaccacccggt
accaatggtgctcctggacagcgaggtggtgcaggtgaacccggtaaaaatggtgccaaa
ggagagccaggcccacgcggtgaacgtggtgaagctggttctccaggtatcccaggacct
aaaggtgaagatggcaaagatggctcgcctggagaaccaggtgcaaacggacttccggga
gctgccggagaaaggggtgcacctggattccgaggacctgctggagcaaatggccttcca
ggagaaaagggtcccgctggggagcgtggtggtccaggccctgcagggcccagaggagct
cctggagaacccggccgagatggtgtcccaggaggtccaggaatgaggggcatgcccgga
agcccaggagggccaggcagcgatgggaaaccagggcctcccggaagtcaaggagaaagt
ggtcgaccaggtcctccaggcccgtctggtccccgaggtcagcctggcgtcatgggtttc
cctggtcctaaaggaaatgatggtgcacctggcaagaatggagagcgaggtggtcctgga
ggtcccggccctcagggtcctgctggaaagaatggtgaaactggacctcagggtcccccg
gggcctactgggccggctggtgacaaaggagacgcgggaccccctggtccccaagggcta
cagggtttgcccggaaccagtggacccccaggagaaaatggaaaacccggtgaaccaggc
ccgaagggtgaatctggttcacctggagttccaggaggcaagggcgactcaggtgcaccg
ggcgagcgtggtcctcccggggctgcaggccccatgggcccccgaggtggagctggaccc
ccaggccccgaaggagggaagggcgctgctggcccccctgggccacccggctcggcaggt
acccctggtctgcaggggatgcccggagagagaggaggccccggcggccccggccccaag
ggtgacaagggcgaaccaggcagtgcaggtgcagatggagccccggggaaggatggtccc
aggggtcctaccggtcccatcggcccccctggcccagccggtcagcctggagataagggt
gaaggtggtgcccccggcctcccgggcatagctggtcctcgcggtggccccggcgagaga
ggtgagcacggccccccgggacccgccggcttccccggagctcccggacagaacggcgag
cccggcgctaagggcgaaaggggcgcccccggcgagaagggtgaaggaggcccccccgga
gtggcagggccccccggaggagccgggcctgcgggtccccccggtccccagggtgtcaaa
ggtgaacgtggcagtcccggcggtcccggtgccgctggcttccctggtggtcgtggtctt
cctggccctcctggcaataatggtaacccaggccccccaggctccagtggtgctccaggc
aaggatgggccccccggtccacccggtaacaacggcgctcctggcagccctggggtgtcc
ggacctaaaggtgatgctggccaacccggtgagaagggatcgcctggcccccagggccct
ccgggagccccaggccctctcggaattgctgggatcaccggggccaggggtctcgcggga
ccaccaggcattccaggtcctaggggaagcccaggcccacagggcgtcaagggtgaaaat
gggaagccaggacccagtggtcacaacggagagcgcggtcctcccgggccccaggggctt
cccggcctggccggcacggctggtgaacctggaagagatggaaacccaggctccgacggg
ctgccaggccgcgacggcgctccgggcggcaagggtgatcgtggggagaacgggtctcct
ggcgccccgggcgcccccggccaccccggcccccccggccccgtgggcccggcggggaag
agcggcgaccgaggcgagacgggccccgctggtccctccggcgctcctggtcctgcaggc
tcccgaggcccccctggtccccaaggtccacgcggtgacaaaggtgaaaccggtgaacgt
ggccttaacggcatcaaaggccatcgaggattccccggtaacccaggtgccccaggctct
ccgggtcctgcaggccaccagggagcaatcggtagtccaggccccgcaggccccagagga
ccagttggacccagtggaccccctggtaaagacggaacaagtggacatccaggtcccatt
ggaccaccaggccctcgaggtaacagaggagaaagaggatctgagggctcccccggccac
ccaggacagccaggtccccccgggcctcctggtgcccctggaccctgctgtggtgggggc
gctgccgccctggctgccgccggaggggagaaagctggcgggtttgccccctattacgga
gatgagccaatggatttcaaaatcaacaccgaggagattatgacttcgctcaaatccgtc
agtggacaaatagaaagcctcgttagccccgacgggtcccgcaaacaccccgctcggaac
tgccgggacctcaaattctgccatccagagctcaagagcggagagtactgggttgacccc
aaccaaggctgcaagttggatgcgatcaaagtattctgcaacatggaaaccggggagacg
tgcctgaatgccagtcccgggagcgttccccggaagaactggtggacagattctggtgct
gagaagaaacatgtttggtttggagaatccatggatggtggcttccagtttggctacggc
aatcccgagctgcctgaagacgtcctcgatgtccagctggcattcctccgccttctctcc
agccgggcctcccagaacatcacgtatcactgcaagaatagcatcgcgtacatggatcac
gccagtgggaatgtaaagaaagccctgaggctgatggggtcaaatgaaggtgaattcaag
gctgaaggaaacagcaaattcacatacacagtcctggaggatggttgcactaaacacact
ggggaatggggcaaaacagtcttcgaataccgaacacgcaaggctgtgagactacctatt
atagatattgcaccctatgatgttggtggtcctgatcaagaatttggtgtggacgttggc
cctgtttgctttttataa
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