Canis lupus familiaris (dog): 484065
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Entry
484065 CDS
T01007
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
484065 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
484065 (PNLDC1)
Enzymes [BR:
cfa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
484065 (PNLDC1)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
484065 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
484065
NCBI-ProteinID:
XP_022274338
Ensembl:
ENSCAFG00000000740
VGNC:
44744
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All DBs
Position
1:49887125..49905218
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AA seq
547 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRHS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWRVRRFWWFSAASHSHVPTFSSLDKDQIKVV
IDEVTRWLDLAEEGDWMTLPGIAGFQAFEVQLVLRQALPDIWTVLRDQGIIVKKVSKQHR
WYLENTSCDRESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLP
ESYDQFKLNIHNLFPILIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVV
IHASKCEKYVETKYPHEAAYDAFLCGSVLLKVAHLLLWRVHSAGPMPEPSFSLYLDVLAP
YVNQVNLIRAGVPKINFSGPDCPSIRPPILLLRVRRWPGVSEQQVYREFQNVCKFDVRRL
SRSQFLLLTNKFKDARSILKEYRGHPTLQVSLYRYWRHSPNINCLLQVCGVVATWALLAL
LLGRPGP
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgacgagttcgagcagagcctccctctgctgcaggagctggtcctg
ggcgccgacttcgtgggtctggacatcgagttcacgggccttcgctccaacctgtcccgg
ccccaacagatcagtctttttgacttgccctcggagtggtatctgaagacccgccacagt
gttcagcagttcaccatctgtcagattggattgtccgtgttttccagtattgaaggagaa
tcaaacaagtatgtagcccattcatgtaacttctttctcttccctacgacatttgggatt
ttggattccgaattctctttccaggcttctagtgttcagtttctgaatcagtatggcttc
gactataacaagtttctcaaaaatgggatcccctatatgaatgaagagcaggagaagaaa
atcaaacacaacatcctgactgggaactggagagttcgcaggttctggtggttttctgca
gcatcccactctcatgtgcccactttcagttctctggataaagaccagatcaaggtggtg
attgatgaagtgacacggtggctggatttggctgaggagggcgactggatgactctcccc
ggtatcgctggcttccaggcctttgaggtccagttggtgctgaggcaggccctccctgac
atctggacggtcctgagagaccaggggattatagtaaaaaaagtgagtaaacaacaccgc
tggtatcttgagaacacctcctgtgatcgagagagctgttggaaggagaagattcttctc
tctgcgaggggcttctcggtgtttttccagatgctggtgaaagcccagaagcccctagtg
ggccacaacatgatgatggacctgctgcatctccacgagaagttcttcaggccgctccca
gaaagctatgatcaatttaagttgaatatccacaacctatttcccattctcattgacacc
aagaatgtgaccaaggacatctggaaggaactgaattttccaagagtttcaaacctttca
gaagtttatgaagtcctaaacagtgacttgaatcctaccaaaaattctgggccagtggtt
attcatgcaagcaagtgtgaaaaatacgttgagaccaagtacccccatgaggccgcctat
gacgccttcctctgtggatcagttcttctgaaagtggcacacttgctcctatggagagta
cacagtgctggtcccatgcctgagccctccttttctctctaccttgacgtgctggctccc
tatgtgaaccaggtgaatcttatccgagctggggtccctaagattaacttttctggtcca
gattgccccagtatccggcctcccatcctcctcctgcgtgtccgtaggtggcctggggtc
agcgagcagcaagtctatcgtgagtttcagaatgtctgcaagtttgatgtgcggcgcctc
tcacggagccagttcctgctcttgaccaataagtttaaggacgctcggagcatcctgaag
gagtacaggggccaccccaccctgcaagtctccctgtaccgatactggagacactccccg
aacatcaactgcttgttacaggtctgtggtgtggtcgctacctgggctctcctggcgctt
ctcctcggaagacctggcccctga
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