KEGG   Caulobacter flavus: C1707_20605
Entry
C1707_20605       CDS       T05702                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
cfh  Caulobacter flavus
Pathway
cfh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cfh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C1707_20605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfh03019]
    C1707_20605
   03009 Ribosome biogenesis [BR:cfh03009]
    C1707_20605
Enzymes [BR:cfh01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     C1707_20605
Messenger RNA biogenesis [BR:cfh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     C1707_20605
Ribosome biogenesis [BR:cfh03009]
 Prokaryotic type
  rRNA helicases
   C1707_20605
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII EryCIII-like_C CMS1
Other DBs
NCBI-ProteinID: AYV48467
UniProt: A0A2N5CPD6
LinkDB
Position
4534335..4536470
AA seq 711 aa
MPFPASHPALERALAAQGYAEPTPVQAAVLEADAEGRDLLVSAQTGSGKTVAFGLAAAPT
LLGDAERLPKAGLPMCLVIAPTRELAMQVNRELEWLYAQAGATVVNCVGGMDARREQRAL
NFGAHIVVGTPGRLRDHIERGHLDLSELKVAVLDEADEMLDMGFREDLEFILDAAPAERR
TLLFSATLARDIIALAKNYQNDALRIDTIDRNEPHRDIEYRAVRVAPNETEHAVVNLLRY
FESPGALVFANTRESVRSLHSKLRERGFDVVGLSGELSQRERADALQALRDGHARVCVAT
DVAARGLDLPDLGLVIHAELPVNKATLLHRSGRTGRAGKKGVSALVVPYTRRRKAEQLLF
AAGVEGVWGGAPSADEIRAKDTERLLDDPIFAEASNEEDLALAEAMLAKRTPTEIAAALI
RTRRAKLPAPEEIYDDPRHGADPGPRSREPREPRDFGDRPEREPRASMDGSEWFRISVGR
RGNADPKWLIPLICRQGHITKKDIGSIRIFDYDTKFEISAEAAVKFGAAVQATVREDVSI
TPTTAPAPRGDAPRAPRPPRNYDDAPRGPRANAPGSRDHTPRPGGYDRDGMSGAKPYGRG
EEPKGDYKARPPRDAKPRDFKPRDRDEAPRPYSPVDSDGAPKRAYKPRAEGRDNADGPRE
YKPRAPKAFGDAPAKPYKAKPAFGDKPAFKGPKPFKGKSDFGGKPKPFKKK
NT seq 2136 nt   +upstreamnt  +downstreamnt
atgcccttccccgcctcccaccccgctcttgagcgggctctcgccgctcagggttacgcc
gagcccacccccgtccaggccgccgtgctggaagccgacgccgaaggccgcgacctgctg
gtcagcgcccagaccggctcgggcaagaccgtggccttcggcctggccgccgccccgacc
ctgctgggcgacgccgagcgcctgcccaaggccggcctgccgatgtgcctggtcatcgcc
ccgacccgtgaactggccatgcaggtcaatcgcgaactggagtggctctacgcccaggcc
ggcgccacggtcgtcaactgcgtcggcggcatggacgcccgccgcgagcaacgcgccctg
aacttcggtgcccacatcgtcgtcggcacgccgggtcgcctgcgcgaccacatcgagcgc
ggccacctggacctctccgagctgaaggtcgccgtcctcgacgaagccgacgaaatgctc
gacatgggcttccgcgaggacctggagttcatcctcgacgccgccccggccgagcgtcgc
accctgctgttctcggccaccctggcgcgcgacatcatcgccctggccaagaactaccag
aacgacgccctgcgtatcgacacgatcgaccgcaacgagccgcaccgcgacatcgagtac
cgcgccgtgcgcgtggcgccgaacgagaccgaacacgcggtggtcaacctgctgcgctac
ttcgagagccctggcgccctggtgttcgccaacacccgcgagagcgtgcgttcgctgcac
agcaagctgcgcgagcgcggcttcgacgtcgtgggcctgtcgggcgaactttcgcagcgc
gagcgcgccgacgcccttcaagctctccgtgacggccacgcccgcgtctgcgtggccacc
gacgtcgccgcgcgcggcctggatctgcccgacctgggcctcgtcatccacgccgaactg
ccggtcaacaaggccacgctgctgcaccgttcgggccgcaccggtcgcgccggcaagaag
ggcgtctcggcgctcgtcgtgccctacacccgtcgccgcaaggccgagcagctgctgttc
gcggccggcgtcgaaggcgtctggggcggtgccccgagcgccgacgagatccgcgccaag
gacaccgagcgcctgctggacgatccgatcttcgccgaagcttcgaacgaggaagacctg
gccctggccgaggccatgctggccaagcgcaccccgaccgagatcgccgccgccctgatc
cgcacccgccgcgccaagctgcctgccccggaagagatctacgacgacccgcgccacggc
gccgatccgggcccccgctcgcgtgaaccgcgcgagccccgcgacttcggcgatcgtccg
gaacgcgagccgcgcgccagcatggacggctcggagtggttccgcatcagcgtcggccgc
cgcggcaacgccgatcccaagtggctgatcccgctgatctgccgccaaggccacatcacc
aagaaggacatcggctcgatccggatcttcgactacgacaccaagttcgagatctcggcc
gaggcggcggtaaagttcggcgccgctgtgcaggccacggtgcgcgaggacgtctcgatc
acgccgaccacggccccggctccgcgcggcgatgctccgcgcgcgccgcgtccgccccgc
aactacgacgacgccccgcgcggtccccgcgccaacgccccgggttcgcgcgaccacact
ccgcgtcccggcggctacgaccgcgacggcatgagcggcgccaagccgtatggccgcggc
gaggagcccaagggcgactacaaggcgcgccccccgcgtgacgccaagccgcgcgacttc
aagccccgcgatcgcgacgaagctccgcgtccctactcgccggtcgacagcgacggcgcc
cccaagcgcgcctacaagccccgcgccgaaggccgcgacaacgccgacggcccccgcgag
tacaagccccgcgcgcccaaggcgttcggcgacgctccggccaagccctacaaggccaag
ccggcgttcggcgacaagcccgcgttcaagggccccaagcccttcaagggcaagagcgac
ttcggcggcaagcccaagccgttcaagaagaagtag

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