KEGG   Caulobacter flavus: C1707_22550Help
Entry
C1707_22550       CDS       T05702                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cfh  Caulobacter flavus
Pathway
cfh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cfh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C1707_22550 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cfh03400]
    C1707_22550 (ligD)
Enzymes [BR:cfh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C1707_22550 (ligD)
DNA repair and recombination proteins [BR:cfh03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C1707_22550 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AYV48813
UniProt: A0A2N5CQS7
LinkDB All DBs
Position
complement(4962705..4965347)
Genome map
AA seq 880 aa AA seqDB search
MAQSQLTEYRRKRDFAKTAEPSGERAVAAAPHLRFVIQKHDATRLHYDFRLEVDGVLKSW
AVTRGPSLDPADKRLSVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWAPEPGFEDV
GKALKKGELKFVLEGERLHGGWVLVRMNWDRNAKDGKGKRSNWLLIKHADEAARPGEGAA
ILEEDRSIASDRTMADIAAGKGKSPKPFILKSRGKADAVWKSRTKAEREALAKEAQETRS
FAPARPASKTAAAKAKPAAMPRFVEPQLCKSVDRPPQGEGWAHEIKFDGYRLQLRVEDGR
AVLRTRKGLDWTERFAGVAEAAADLPDAIVDGEAVVLDEAGQPDFAALQAALAEGGEGEI
IFFAFDLLFAGGEDLRTLPLRERKARLKALLGEDEPRLRYVDHFETAGDAVLLSACRLEL
EGIISKRLDAPYRSGRSETWTKAKCRAGHEVVIGGWTTTGTAFRSLIAGVMRDGKLVHVG
RIGTGFGKDKVAKLLPKLKALETDRSPFQGQGAPRKAANIHWVKPQLVAEIEYAGFTGEG
AIRQAAFKGLREDKPASEVAADAVPAAQAELAEPAPKAAKAVTSKSDCVVLGVPISKPDK
PLWPDAGDGEPGTKLDLARYYAAVGEWMLPHIEGRPASVIRVPDGIGGETFFQRHAMRGV
SSLIETVTVEGDKQPYIKFDRIEALVAAAQIAAVEIHPWNCQPGDPEVAGRLVFDLDPAP
EVTFEDVIVAAREMRDRLEELGLASFCKTTGGKGLHVVTPLSDKVPWDQAKAFAREVCAR
MAADDPDRYLITMSKKARVGKIFLDYLRNDRTSTAVAPLSARARPGATVSMPLNWTQVKA
GLDPGRFTIRTAPELIAKSTAWADYADAVKPLKAAIKRLG
NT seq 2643 nt NT seq  +upstreamnt  +downstreamnt
atggcgcagtcgcaactgaccgagtatcgccgcaagcgcgacttcgccaagacggccgaa
cccagcggcgagcgcgccgtggccgccgcgccgcatctgcgattcgtcatccagaagcac
gacgccacgcgcctgcactacgacttccggctggaggtcgacggggtgctgaagtcctgg
gccgtgaccagggggccttcgctggatcccgcagacaaacggctgtcggtcgaggtcgag
gaccatccgctcgactacggcgacttcgagggcacgatccccaagggccagtacggcggc
ggcacggtgcagctgtgggaccgcggctactgggcgccggagcctggcttcgaagacgtc
ggcaaggccctgaagaagggcgagctgaagttcgtgctggagggcgagcgcctgcacggc
ggctgggtgctggtccgcatgaactgggatcgcaacgccaaggacggaaagggcaagcgc
agcaactggctgctgatcaagcacgccgacgaggcggcgcggccaggcgagggagcggcg
attctcgaagaggaccgttcgatcgcgtcggaccggaccatggccgacatcgcggccggc
aagggcaagtcgcccaagccgttcatcctaaagtccaggggcaaggccgacgccgtctgg
aagtcgcgcaccaaggccgagcgcgaagccctggccaaggaggcgcaggagacccgcagc
ttcgcgccggccaggcccgcgtcaaagacggccgccgcgaaggcgaagcccgccgccatg
ccgcgcttcgtcgagccgcagctctgcaagtcggtcgaccggccgccgcagggcgagggc
tgggcgcacgagatcaagttcgacggctatcgcctgcagctgcgcgtcgaggatggtcgg
gcggtccttcgcacgcgcaagggcctggactggaccgagcggttcgccggtgtcgccgag
gcggccgccgaccttccggacgcgatcgtcgacggcgaggcggtggtgctggacgaggcc
ggccagccggatttcgcggccctgcaggcggcgctggccgagggcggggagggcgagatc
atcttcttcgccttcgacctgttgttcgcgggcggcgaggatctgcggaccctgccgttg
cgcgagcgcaaggcgcggctcaaggcgctgctgggagaagacgagccgcggttgcgctat
gtcgaccacttcgagacggcgggcgacgcggtgctgctgtcggcctgcaggctggagctc
gagggcatcatttccaagcgactcgacgcgccgtatcgctctggtcgcagcgagacctgg
accaaggccaagtgccgggccgggcacgaggtggtgatcggcggctggacgacgacggga
accgccttccgctcgctgatcgccggggtgatgcgggacggcaagctcgttcacgtcggc
cggatcggcacgggtttcggcaaggacaaggtcgcgaaacttctcccgaaactgaaggcg
ctcgagaccgaccgctcgccgttccaggggcagggcgcgccgaggaaggccgccaacatc
cactgggtgaagccgcagctggtggccgagatcgaatatgccggcttcaccggcgagggc
gcgatccgccaggccgccttcaaggggctccgcgaggacaagccggcctcggaggtcgcg
gccgacgccgtgccggccgcccaggcggaactggccgaacccgcgcccaaggccgccaag
gccgtgacgtccaagtccgactgcgtcgtgctgggcgtgccgatctccaagcccgacaag
ccgctttggcccgacgcgggcgacggcgagccggggaccaagctcgatctcgcccgctac
tatgccgccgtcggcgagtggatgctgccgcacatcgagggccggccggcctcggtgatc
cgcgtgccggacggcattggcggcgagacctttttccagcgccacgccatgcgcggggtg
tcgtcgttgatcgagaccgtgacagtcgaaggcgacaagcagccctacatcaagttcgac
cgcatcgaggctctggtcgccgcggcccagatcgccgccgtcgagatccatccctggaac
tgccagccaggcgatcccgaggtcgccggccggctggtcttcgaccttgaccccgcgccc
gaggtgaccttcgaggatgtcatcgtcgccgcccgtgagatgcgcgatcgccttgaggag
ctgggcctcgccagcttctgcaagaccaccggcggcaaggggctgcacgtggtcacgccg
ctgtcggacaaggtcccgtgggaccaggccaaggccttcgcccgcgaggtctgcgcccgc
atggccgccgacgatcccgaccgctacctgatcacgatgagcaagaaggccagggtcggg
aagatcttcctggactacctgcgcaatgaccgcaccagcacggcggtcgccccgctgtcg
gcgcgcgcgcggccgggtgcgacggtgtcgatgccgctgaactggacgcaggtgaaggcg
ggactggatcctggccgcttcacgatccgcaccgcgcccgagttgatcgccaaaagcacg
gcctgggcagactacgccgacgcggtcaagcccctgaaggcggcgatcaagcggctcggc
taa

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