Camponotus floridanus (Florida carpenter ant): 105251570
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Entry
105251570 CDS
T03919
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105251570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfo03041
]
105251570
Enzymes [BR:
cfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105251570
Spliceosome [BR:
cfo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105251570
Complex C
U4/U6.U5 tri-SnRNP related factors
105251570
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
SLFN-g3_helicase
Flavi_DEAD
ATPase
T2SSE
TsaE
PhoH
Motif
Other DBs
NCBI-GeneID:
105251570
NCBI-ProteinID:
XP_011256788
LinkDB
All DBs
Position
Unknown
AA seq
876 aa
AA seq
DB search
MEFVHSDEEELQKDIKERDSFANRLKARDESKTRKIAMPSGSGAAEAAKRLKIMEVDAKE
KLVPKLRVESRRKYLEKRKEDKVAELEADILDDEYLFEEEVLTEREKHERSRKKQLLYLA
KEHEKARELERIQRYHMPLEKGKVEPEPDVDKEPPQSEQSKWESDQISSAVFRFGAKDRK
AQQEYSLLMEDEMIEFVQVLHMPGHDREKKREESPPAHVKSLQTIQETKKSLPIYPFRKD
LIQAIKEHQVLIIEGETGSGKTTQIPQYLYESGFAEDGKIIGCTQPRRVAAMSVAARVAH
EMAVKLGNEVGYAIRFEDCTSHRTRIKYMTDGTLHREFLSEPDLASYSVMIIDEAHERTL
HTDILFGLVKDIARFRPDLKLLISSATLDVTKFSEFFDDAPIFRIPGRRFPVDIYYTKAP
ESDYIEACVVSILQIHTTQPSGDILVFLTGQEEIETCQEILQERVRRLGSKLAELLILPV
YANLPSDMQIKIFQPTPPGARKVVLATNIAETSLTIDNIVYVIDPGYAKQNNFNPRTGME
SLIIVPISKASASQRAGRAGRVAPGKCFRLYTAWAYQHELEDSTVPEIQRINLGNAVLTL
KALGIDDLMHFDFLDPPPPETLILALEQLYALGALNHRGELTKLGRRMAEFPLDPMMAKM
LLASEKYRCSEEIATIAAMLSVNGAIFYRPKDKIIHADAARKNFYVLGGDHLTLLNVYNQ
WAQSDFSTHWCYENFIQHRSMKRARDVREQLVGLMQRVEMELVSGITETINIRKAITAGY
FYHVARLSKGGHYKTAKHNQTVAIHPNSSLFQELPRWLLYHELVFTTKEFMRQVTEIESK
WLLEVAPHYYKPKEIEDSTNKKMPKVTGRARPDGTN
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgtacattctgatgaagaggaacttcagaaggatatcaaggagagagatagt
tttgctaaccgtcttaaagccagagatgaaagcaaaacacgcaaaattgctatgcctagt
ggttctggagccgctgaagcagctaaaaggcttaaaattatggaggttgatgcaaaagaa
aaactggtaccaaaattaagagttgaatctcgtagaaaatatttggagaaacgtaaagag
gacaaagttgcagaattggaggctgatattcttgatgacgaatatttatttgaagaagaa
gttttaacagaaagggaaaagcatgaaagatctcgaaagaagcaattattgtatttggca
aaagaacatgaaaaggcgagggagcttgagcgtattcagcgttatcatatgcctcttgag
aagggtaaggtggaaccagaacctgatgttgacaaagaacccccacagtcggaacaaagt
aaatgggaatcagatcagatatcatcagctgtttttcgttttggtgctaaagatagaaaa
gctcaacaagaatatagtcttctcatggaggatgagatgatagaatttgttcaagtatta
catatgccagggcatgatagggagaaaaaacgtgaagaaagtccacctgcacatgttaaa
agcttgcaaacgatacaagaaacaaagaagagtctacccatttatccttttagaaaagat
ttgatacaagctatcaaggagcatcaggttttgataatagaaggtgaaacgggatcgggg
aaaaccactcagattccacaatatttgtatgaatctggatttgcagaggatggtaaaatt
attggatgcacacagccgcggcgagtagcagcgatgtcggtggctgcaagagtggctcac
gaaatggccgttaaattgggcaatgaagttggatatgctattcgtttcgaagattgtacg
tcgcatcgcacccgaatcaagtatatgactgatggtacattgcaccgagagttccttagt
gaacctgatctggcgtcgtatagcgtaatgataattgatgaagcacacgaacggacttta
catactgacatattatttggattagtgaaagacattgcgaggtttcgtcccgatttaaaa
ctattaatatcatcagctacgttggatgttacaaaatttagtgaatttttcgacgatgca
cctatatttaggatacctggacgtcgttttcccgtcgatatttactacacaaaggcaccg
gaatcagattatattgaggcgtgtgtagtttccattcttcaaattcacacaacacaacca
tcaggagatatattggtgtttttgactgggcaagaagaaattgaaacatgtcaggaaata
ttacaggagagagtgagaagactgggtagcaagttggcagaactcctaattttacctgta
tatgcgaatttaccaagcgatatgcaaattaagatatttcaaccaactccacctggtgcg
agaaaggtagtattagcgactaatatagcagagacatcattgaccatagacaacatagtg
tatgtaatagatcctggctatgcaaagcaaaacaattttaatccacgcaccggtatggaa
agcttaataatcgtaccgatcagtaaagcatccgctagtcagagagcgggacgtgctggt
agagtagcacccggcaagtgttttcgtctctacacagcttgggcctatcaacacgaactt
gaagatagcactgtacccgagattcaaagaattaatcttggtaatgcagtactcactttg
aaagctctcggtatcgatgatctgatgcactttgatttcttggatcctccgccacctgaa
acactaattttggccctggagcaactctatgcgttgggcgcgctcaatcatcgcggagaa
ctaacaaaacttggacgtagaatggctgagtttccgctggatccaatgatggctaagatg
ctattagctagtgaaaaatatcgttgttcggaagagatagcaactattgcggccatgctt
tcagtaaatggcgctattttttatagaccaaaggacaaaattatacacgcagatgctgcg
cgcaaaaatttttacgtactgggtggtgatcatctgacacttcttaatgtatataatcaa
tgggcacagagtgattttagtacacattggtgttacgaaaatttcatacaacatagatcc
atgaaacgagcaagagacgttagagaacagttagtaggtttaatgcaacgtgtagagatg
gaattagtttcaggtatcacagaaactattaatattagaaaggctattacagctggttac
ttttaccatgtggcacggttgtcaaagggaggtcattataagactgcaaagcataatcaa
acagtcgctatacacccaaatagttctttattccaggaacttccacgctggcttctttat
catgaacttgtctttactaccaaggaatttatgcgtcaggtgacagaaattgaaagcaaa
tggttattagaagtggcgcctcactattataaacctaaagagatagaagactcaacgaac
aagaagatgcctaaagttacaggcagagcacgaccagatggtacaaattaa
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