KEGG   Collimonas fungivorans: CFU_1974Help
Entry
CFU_1974          CDS       T01583                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cfu  Collimonas fungivorans
Pathway
cfu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cfu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CFU_1974
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cfu03400]
    CFU_1974
Enzymes [BR:cfu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CFU_1974
DNA repair and recombination proteins [BR:cfu03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CFU_1974
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AEK61805
UniProt: G0A8U2
LinkDB All DBs
Position
2319679..2322171
Genome map
AA seq 830 aa AA seqDB search
MSDPLTSYRKKRDFTVTPEPSTAGQASRGGRAFVIQKHWASRLHYDFRIELGGAMKSWAI
PKGPSLDPKDKRMAVHVEDHPISYNSFEGDIPAGQYGAGKVIIWDKGSWEAVDGDPLKQY
RSGHLKFELRGHKLHGRWALIRMKPDSQKKEAWLLIKEKDDYARPALTYSVVDEMPDSVA
GLAVKEERKPAPVAASPRKHAKMPAGAVKAALPTHLAPQLATLADAAPGGAGWLYEIKFD
GYRLLARVSGKSLRLYTRNGNDWTAKLPALTAALQRMKLPAGWYDGEIVVLDERGLPDFQ
RLQQAFDSAGSAAAVSYYLFDLPFYDGYDMRGVPLRERRKLLQSLFNTKTPAPVRLSDAF
DVSAKDIVASACRMGLEGVIGKRQDSLYVTRRSTDWIKLKCTQRQEFVIGGYTDPQGSRI
GIGSLLLGVHDAHGKLRYAGNVGTGFDARGLAALANKLKAISAASSPFSGATGRYRKVHW
VEPLLLAEVSFAEWTADGHIRHSVFHGLRSDKQPQAINRENAMHIPAAEPQSKTLESLKV
THGERVIDAASGITKIELIRYYGLVAPLMLPHLKGRPVSLLRAPDGLAGQLFFQKHLGEI
KMHGVRQLATALDPGHPPLLEIAGAGGLLSAAQMNVLEFHTWNALKTSIMKPDRMTFDLD
PGEKTTWESVQQAALLLRAFLQQLELEAVIKTSGGKGLHVVVPIKKQHGWDTVKDFSHAI
VDHLAGALPDRFVARSGARNRVGKIFVDYLRNGFGATTAAAWSVRARPGLGVSVPIGWDE
LEKIKGGAHWTVADIHARLDQGNAPWEANGSRPQSLARPMKILEFKPARK
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atgtccgacccattgacaagctacaggaaaaagcgggatttcaccgtcaccccggagccg
tctacggcagggcaggccagccgcggcgggcgcgcgttcgtcatacaaaagcattgggcc
tcgcggctgcactacgatttccgcatcgaactcggcggcgcgatgaaaagctgggcgatt
cccaagggacccagcctggatcccaaggacaagcgcatggcggtgcatgtcgaggaccat
ccgatttcctacaacagcttcgagggggacattccggccggccaatatggcgccggcaaa
gtcatcatatgggacaaaggcagctgggaagctgtcgacggcgacccgctcaagcaatac
cggagcggccatctgaaattcgaattgcgcggacacaaattgcacgggcgctgggccctg
atacggatgaaaccggatagccaaaaaaaagaagcctggctgttgatcaaggaaaaagac
gactacgcgcggccggcgctgacgtacagcgttgtggatgaaatgccggacagcgtcgcc
ggactggctgtcaaagaagaacggaaaccggccccggttgccgccagcccgcgcaagcac
gcaaaaatgccggctggcgcggtcaaggccgcattgcccacgcatctggcgccgcagctg
gcgaccctggctgacgccgcacccggcggcgcgggctggttatatgaaatcaagttcgat
ggttatcgtctgctggcccgggtcagcggcaaatccttgcgcttgtacacgcgcaacggc
aatgactggaccgcaaagttaccggctttgacagctgcgctgcaacggatgaaattgccg
gcaggctggtatgacggcgaaatcgtcgtgcttgatgagcgcggcttgcccgatttccag
cgcctgcagcaggccttcgatagtgccggcagcgctgcagccgtcagctactacctgttc
gacctgcctttttacgatggttacgatatgcgcggcgtgccgctgcgtgagcggcgcaag
ctgctgcaatccctgttcaacacaaaaacgccggcgccggtccgcctcagcgatgcgttt
gacgtcagcgccaaggatatcgtcgcctccgcctgccggatgggcctggaaggagtgatc
ggcaaacggcaggactccctgtatgtcacgcgccgctccaccgactggatcaagctgaaa
tgcacccagcgccaggagtttgtcatcggcggctacaccgatccgcaaggctcgcgcatc
ggcataggttcgctgctgctgggagtgcacgatgcccacggcaagctgcgctacgcggga
aatgtcggcaccggcttcgatgcgcgcggcctggcggcgctggcaaacaaactcaaggca
atatccgccgccagcagtcctttcagcggcgccaccggacgctatcgaaaagtgcattgg
gtagagccgctgctgctggcggaagtgtcgttcgccgaatggaccgccgacggccatatc
cgccattccgtgttccatggcttgcgcagcgataaacagccgcaggcaatcaaccgggag
aacgccatgcatattcctgccgcagagccgcaaagcaagacgctcgaatcgctgaaagtc
acgcacggcgaacgcgtgatcgacgctgccagcggcatcaccaaaatcgagctgatacgc
tattacggcctggttgcgccgctgatgctgccgcacctgaagggccggccggtgtcattg
ctgcgggccccggacgggctcgccggccagctgttcttccagaagcacctgggcgagatc
aagatgcatggcgtgcgccagctggcgacggcgctggaccctggccatccgcccttgctg
gaaatcgccggagccggaggactgctatcggcggcgcaaatgaatgtgcttgaattccat
acatggaatgcgctcaagacgtccatcatgaaacccgaccgcatgactttcgatctcgat
cccggcgaaaaaaccacatgggaatcggtgcagcaagctgctctgctgctgcgcgctttc
ctgcagcaactggagctggaggccgtgatcaagaccagcggcggcaaaggtctgcacgtg
gtggtgccgatcaagaaacagcatggctgggatacggtgaaggatttttcgcatgccatc
gtggatcatcttgccggcgctttgccggatcgttttgtcgccaggagcggcgcgcgcaac
cgggtcgggaaaatattcgtcgattacctgcgcaacggattcggtgcgacgacggcggcg
gcctggtcggtgcgggcccggccgggccttggcgtgtccgtgccgataggctgggatgag
ctggaaaaaatcaagggcggcgcgcactggaccgtggccgacatccatgcgcggctggac
cagggaaatgcgccatgggaagcaaatggctccaggccgcaaagcctggcgcggcccatg
aaaatcctggaattcaaaccggcgcggaaataa

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