KEGG   Chlamydia trachomatis F/SW5: FSW5_3161
Entry
FSW5_3161         CDS       T02166                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta-prime chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cfw  Chlamydia trachomatis F/SW5
Pathway
cfw03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cfw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FSW5_3161 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cfw03021]
    FSW5_3161 (rpoC)
   03400 DNA repair and recombination proteins [BR:cfw03400]
    FSW5_3161 (rpoC)
Enzymes [BR:cfw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     FSW5_3161 (rpoC)
Transcription machinery [BR:cfw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     FSW5_3161 (rpoC)
DNA repair and recombination proteins [BR:cfw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      FSW5_3161 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: CCE14367
LinkDB
Position
complement(351119..355309)
AA seq 1396 aa
MFREGSRDDAALVKEGLFDKLEIGIASDVTIRDKWSCGEIKKPETINYRTFKPEKGGLFC
EKIFGPTKDWECYCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFK
TTPSRIGNVLGMTASDLERVIYYEEYVVIDPGNTDLEKKQLLNDAKYREVVEKWGKDAFV
AKMGGEAVYDLLKSEDLESLLGELKERLRKTKSQQARMKLAKRLKIVEGFVSSSNRPEWM
VLKNIPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV
GPELKFNQCGLPKEMALELFEPFIIKRLKDQCSVYTIRSAKKMIQRGAPEVWDVLEEIIK
GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ
LEAKVLMMAPDNIFLPSSGKPVATPSKDMTLGIYYLMADPTYFPEEHGGKTKAFKDEVEV
LRALNAGGFILKDEICGSRRDETGRGIHIHEKIKVRIDGQIIETTPGRVFFNTIVPKELG
FQNYSMPSKRISELILQCYKKVGLEATVRFLDDLKELGFVQSTKAAISMGLKDVKIPEIK
KEILKDAYDKVAVVKKQYEDGIITDGERHSKTISIWTEVSDLLSNALYSEIKKQTNSKHN
PLFLMIDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGAR
KGLADTALKTADSGYLTRRLVDVAQDVIITERDCGTLNHIEVSTIRQGSEELLPLKDRVY
GRTVSENIYQPGDKSNVLACAGDVLTSAQAEAIDDAGVESVKIRSTLTCESRRGVCAKCY
GLNLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVAECDGILVY
LDLRVVVDQEGNNLVLNKMGALHLVQVEGRSLSEYKKLLSTKSIESLATFPVELGAKILV
NDGAAVTAGQRIAEVELHNIPIICDKPGFVHYEDLVEGVSTEKVTNKNTGLVELIVKQHR
GELHPQIAIYADANMKELVGTYAIPSGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGG
LPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLISLTKHLI
VQRGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIV
RQMLQKVRITDPGDTTLLFGEDVDKKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTE
SFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQHLEKEQ
EDLVFDFDSEFESVAG
NT seq 4191 nt   +upstreamnt  +downstreamnt
atgttcagagaaggttctcgagacgatgcagccctggtaaaagaagggctgtttgataag
ttagaaattgggattgcttcagatgtgactattcgcgacaagtggtcttgtggcgaaatt
aagaaaccggagacgatcaactaccgtacatttaaacctgaaaaaggcggtttattctgc
gaaaagatttttgggcctactaaggactgggaatgttattgcggtaaatataagaagatc
aaacataaaggaattgtgtgtgaccgctgtggagtagaggtcacactttctaaagtgcga
cgagaaagaatggctcatattgagttagccgttcccattgttcacatatggttcttcaaa
acaactccttcaagaatcgggaatgttttaggaatgaccgcttcggatttggagcgtgta
atttattacgaggaatatgttgttatcgatccaggtaatactgatctcgagaagaaacaa
cttcttaatgatgcgaaatatcgagaagttgttgaaaaatggggtaaagatgctttcgtt
gccaaaatgggaggagaggctgtttacgatcttctcaaatctgaagatttggaaagcctt
ttaggagagctcaaagagcgtttaagaaaaacgaaatctcagcaagcgagaatgaagctg
gctaaacgtctgaagatcgtagaaggttttgtatcttcttcgaaccgtcctgaatggatg
gtattgaagaacattcctgttgttcccccagatttacgtcctttagttcctttagatggt
ggacgttttgctacttcggacttaaatgatctgtatcgtagagttattaaccggaataat
cgcttaaaagctattttgcggctaaaaactccagaggtcattgtccgtaacgagaagcgg
atgttgcaggaagctgttgacgctttgtttgacaatggacgtcacgggcatcctgttatg
ggagctggaaatagacctctgaagtctttgtcagagatgttgaaagggaaaaacggacgt
ttccgacagaatttgttaggtaaacgagtggattactccggacgttcagtgattattgtt
ggtcctgaattgaagtttaatcagtgcggtttgcctaaggaaatggctctggaattgttt
gagccatttattatcaaacgattaaaggatcagtgtagtgtttatactattcgttcagca
aagaagatgattcagcggggagctccagaagtttgggatgttcttgaagaaataattaaa
gggcatccagttttactaaaccgagctcctactttgcaccgattagggatacaggctttt
gagccagtattgattgaagggaaggctattcgggtccatcctctggtatgtgcagcgttc
aatgctgactttgatggagaccaaatggctgttcacgtgcctctctccatcgaggcgcag
ttagaagctaaggttttgatgatggctccagacaacattttcttgccatcttctgggaaa
cctgttgcaactccttctaaggatatgacattgggtatctattatttaatggctgatcca
acctacttccctgaagaacatggagggaaaacaaaagcatttaaagacgaagtagaagtg
cttcgagctctgaatgctggagggtttattctgaaggatgagatctgtggttctcgtcga
gatgaaactggacgagggattcacatccatgagaaaattaaagttcgaatagatggtcag
attattgaaacaacgcctggtcgtgtatttttcaataccatcgttcctaaagaactcggt
ttccaaaactatagcatgccaagtaagcgtatcagtgaattgattctgcagtgctataag
aaagttgggttagaagctactgtacgcttcctagacgatctcaaagaattaggctttgta
caatctacgaaagctgcgatttccatgggtctgaaggatgttaagattcctgaaatcaaa
aaagaaatcttaaaagatgcttacgataaagtggctgttgttaagaagcagtacgaggac
gggattattactgatggggaacggcattccaaaacgatcagtatttggactgaagtctca
gacctcttgtcgaatgctttgtactctgagatcaagaaacaaacaaatagcaaacacaat
ccgctattcttgatgattgattctggagctcgaggaaataaatctcagttgaaacagttg
ggtgctttacggggactaatggctaaaccaaacggagccattatcgaatctccaattact
tcaaacttccgagaaggtttaactgttctagagtactctatttcttctcacggagctaga
aagggattggcagataccgcgcttaaaacagcggattccggatatttgactcgtcgttta
gtagacgtcgctcaggacgtcattattactgagagagattgtggtactttaaatcatatc
gaggtatcgacaatccgtcagggttctgaagaactgctgcctctaaaagatcgtgtttac
ggacgtacggtttccgaaaacatttatcagcctggtgataagagcaacgtcttagcgtgt
gccggcgatgtattaacttctgctcaagctgaagctattgatgacgctggtgttgaaagt
gtgaagattcgttccactcttacttgtgaaagtcgtcgaggagtatgtgctaaatgctac
ggtttgaatctcgctaatggtcgtttgattggattaggagaagctgttggtattatcgca
gcccaatccatcggggaacctggaactcagttaacaatgagaacattccaccttggaggg
attgctgcgacatcctcaactccagagatcgttgccgagtgcgatgggattcttgtttac
ttagatttgcgtgttgtcgtagatcaggagggtaataatcttgtgcttaacaagatggga
gctcttcacttagttcaagtcgaaggacgaagcttaagtgaatataagaaacttttgagt
acgaagtctattgaaagtttggcgacattccctgtggaattaggagctaagattttagtt
aatgatggtgctgctgttacagcaggacagagaattgctgaggtagagcttcataacatt
ccaattatctgtgataagccaggattcgttcattacgaagatttggtagagggagtctcc
acagagaaggtcacgaataagaatactgggcttgttgagttaatcgtaaaacagcacaga
ggggaattgcatcctcagatcgccatatacgctgatgccaatatgaaagagttggtcggt
acgtatgctattccttctggagcgattatctccgtagaagagggtcaacgtatcgctcca
ggaatgctcttagcgagattgccccgaggggccatcaagactaaagatattactggaggt
ttgccaagggttgccgagttagtagaagctcgtaagcctgaagatgctgctgatatcgct
aagattgatggggttgttgacttcaaaggcattcagaagaacaagcgtattcttgttgtc
cgagatgagattacgggaatggaagaggaacatttgatttctctaaccaaacacttaatc
gtacaacgaggagacagcgtaatcaaaggtcagcagttgacggatggtttagttgttcca
catgagatccttgagatttgtggtgttagagagcttcagaaatatttagttaatgaggtt
caagaagtataccgcctacaaggggtggacattaacgacaaacacatcgaaattattgtt
cgtcagatgttgcagaaagttcgtattactgatccaggtgatacgacgttattgtttgga
gaagatgtcgataagaaagagttttatgaagagaaccgtcgcacggaagaggatggaggg
aaacctgctcaagctgttccagtgctgttgggaatcactaaagcttctttgggaactgag
tcctttatttctgccgcttcgttccaagatacaactcgggtcttaacagacgctgcttgc
agtagtaagacagactatctgttaggattcaaagagaatgtgatcatgggacacatgatt
cctggaggtacaggatttgatacgcacaagcgtattaagcagcatcttgaaaaagagcaa
gaagacttagtctttgattttgacagcgagttcgagtctgtggcaggttaa

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