Cricetulus griseus (Chinese hamster): 100758374
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Entry
100758374 CDS
T02813
Symbol
Sympk
Name
(RefSeq) symplekin isoform X2
KO
K06100
symplekin
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge03015
mRNA surveillance pathway
cge04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100758374 (Sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
100758374 (Sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cge03021
]
100758374 (Sympk)
03019 Messenger RNA biogenesis [BR:
cge03019
]
100758374 (Sympk)
Transcription machinery [BR:
cge03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100758374 (Sympk)
Messenger RNA biogenesis [BR:
cge03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100758374 (Sympk)
U7-dependent histone pre-mRNA processing factors
100758374 (Sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
Cnd1
PDS5
CRM1_C
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
100758374
NCBI-ProteinID:
XP_027286760
UniProt:
A0A9J7JRV5
LinkDB
All DBs
Position
9:complement(28315572..28346545)
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AA seq
1295 aa
AA seq
DB search
MASGSGDSVTRRSVASQFFTQEEGPGVDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEAWPALPVPFSSIPSKRDIELLL
KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVINDLQEACWDMVSSMAGEI
ILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVL
WEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPT
LAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDSRKR
SRDDADSTLKKMKLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTP
DNVANLVLISMVYLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQ
TKQCKEEPKEEKVVKPESVLIKRRLSAQGQAISVVGSLSAMSPLEEEVPQAKRRPEPIIP
VTQPRLAGAGGRKKIFRLSDALKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQARIKI
LASLVTQFDSGLKAEVLSFILEDVRGRLDLAFAWLYQEYNAYLAAGASGTLDKYEDCLIR
LLSGLQEKPDQKDGVFTKVVLEAPLITESALEVIRKYCEDESRAYLGMSTLGDLIFKRPS
RQFQYLHVLLDLSSHEKDRVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSV
LFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIE
QPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDV
RFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIA
LHNIDSVKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTM
YPRLGGFVMNILARLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKC
PELREPLLAHVRSFTPHQQAHIPNSIMTVLEASGKQEPEVKEAPAGPLEEDDLEPLTLAP
APAPAPAPRPPQDLIGLRLAQEKALKRQLEEEQKLKPPGVGVPTAPAPSSMPLVLPAARA
GPTPAEEAMEYREEGPECETPAIFISMDDDSGLAETTLLDSSLEGPLLKEAAAVGPGPKD
ERSPQSLGHAAAAAAEEALATSSPEAREPESKGNS
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtggcagtggggacagtgtcacccgccggagcgtggcatcacagtttttcaca
caagaggaagggccaggcgttgatggcatgaccacttctgagagggtggtagatcttctg
aaccaggcagcgctgatcaccaatgactccaaaatcacagtgctcaaacaggtccaggag
ctgatcatcaacaaagaccccaccctgctcgacaacttcttggatgagatcatcgctttc
caagcagacaagtccatcgaggtgcgcaagttcgtcataggcttcatcgaggaggcatgg
ccagcattacctgtccccttctcttccatccccagcaagcgggacattgagctgctgcta
aaactgatcgccaacctcaacatgctcctgcgggacgaaaatgtgaacgtggtaaagaaa
gccatcctcaccatgacgcagctctacaaggtggccctgcagtggatggtgaagtctcgg
gtcatcaacgatctccaggaggcctgctgggacatggtgtcctccatggctggggaaatc
atcctactcttggattccgacaacgatggcatccgtacacatgccatcaagtttgtggag
ggcctcattgtcaccctgtcaccccgcatggctgattcagaggtcccccgacgccaagag
catgacatcagtctggaccgaatccctcgagatcacccctacatccagtacaatgtcctg
tgggaggaaggcaaggcagccttggagcagctgctgaagttcatggtacaccccgccatc
tcctccatcaacctgaccacagccctgggctcccttgccaacatcgcccgccagagaccc
atgttcatgtccgaggtgatccaggcctatgagaccctgcatgccaacctgcccccaacg
ctggccaagtcccaggtgagcagcgtgcgtaagaacctcaagctgcacttgctgagtgtg
ctcaagcaccctgcctccttggagttccaggcccagatcaccaccctgctggtggacctg
ggcaccccccaggcagagatcgcccgcaacatgcccagcagcaaagactcccgaaaacgg
tcccgggatgatgcagactccacgctgaagaagatgaagctggagcccaacttgggagaa
gatgatgaggacaaagacttggaacctggcccatcagggacttcaaaggcctcagcccag
atctcaggccagtcagacacggacatcactgctgagttcttgcagcctctgctaacacct
gacaatgtggccaatctggtcctcatcagcatggtgtacctacctgagaccatgcctgcc
tccttccaagccatctacaccccggtggagtctgcaggcaccgaagcccagatcaagcac
ctggctcggctcatggccacacagatgacagctgcaggactgggacctggtgtggagcag
acaaaacagtgcaaggaagagcccaaggaggagaaggtggtgaagcccgagagtgtcctg
atcaagcggcgcctgtcagcgcagggtcaggccatctctgtggtgggctctctgagcgcc
atgtcccccttggaggaggaagtaccccaggccaagaggaggcccgaacctatcatccct
gtcacacagccacggctggcgggtgctggtgggcgcaagaagatcttccgtctgagtgac
gccctgaagccgctaacggacgcccaggtggaagccatgaagctgggagccgtcaagcgc
atcctgagggcggagaaggctgtagcctgcagtggggcagcccaggcgcgcatcaagatt
ctggccagcctggtaacacagttcgactctggactcaaggcagaggtgctgtccttcatc
ctggaagatgtccggggccgcctggacctggctttcgcctggctctaccaggaatacaat
gcctacctagcagccggggcttcaggcactctggacaagtatgaggactgcctcatccgc
ctgctctctggcctgcaggagaaaccggaccagaaggatggggtcttcaccaaggtggtt
ttggaggccccgctgatcacagagagtgccttggaggtgatccggaagtattgtgaggat
gagagtcgcgcctacctgggcatgtcgacactgggagacctgatcttcaagcgcccttct
cgccagttccagtacctgcacgtcctccttgacctcagctctcatgagaaggacagggtg
cgctcccaggctctgctcttcattaagcgcatgtatgagaaggagcagcttcgagagtat
gtggagaaattcgccctcaactacctgcagctcctggtccaccccaacccaccctcagtg
ctcttcggagctgacaaggacacagaggtggctgcaccctggacggaggagacagtgaag
cagtgtctgtatctctatctggctctcctgcctcagaaccacaagctgatccacgagctg
gcagccgtgtacactgaggccatcgccgacatcaagcggaccgtgctgagggtcattgag
cagccgatccgagggatgggcatgaactccccagagctgctactgctggtggaaaactgc
cccaaaggggcagagacgctggtcacccgctgtctgcacagcctcacggacaaagtgccg
ccgtccccagagctggtaaagcgggtccgagacctgtaccacaagcggctgcctgatgta
cgcttcctcatccctgtgctcaatggcttggagaagaaagaggtcatccaggccctgccc
aagctcatcaaactcaaccccatcgtggtaaaggaggtcttcaaccgcctgctgggcacc
cagcacggtgaagggaactcagccttatcccccctgaacccaggagagctgctgattgct
ttgcacaacattgactccgtcaagtgtgacatgaaatccatcatcaaagccaccaacctg
tgttttgcggagcggaacgtgtatacgtcggaggtgctggctgtcgtgatgcagcagctc
atggagcagagcccgctgcccatgctgctcatgcggaccgtcatccagtccctgaccatg
tacccccgcctggggggcttcgtcatgaacatcctggcccggctcatcatgaagcaggtg
tggaagtaccccaaggtttgggagggtttcatcaagtgctgccagcgcaccaagccccag
agcttccaagtcatcctgcagctacctccgcagcagctcggcgccgtctttgacaagtgc
cccgagctccgggagccactgctggcccacgtgcgctccttcaccccccaccagcaagca
cacatccccaactccatcatgacggtcctggaggccagcggcaaacaggagccagaagtc
aaggaagcacctgcagggcccctggaggaggatgacttggagcccttgactttggccccg
gccccggctcctgctcctgctccgcggccccctcaggacctcatcggcctgcgattggct
caggagaaggccctgaagcggcagctagaggaggaacagaagctgaagcccccaggcgtg
ggggtgcccacggccccggcaccctcctccatgcccttggtgctgccggcagcccgagcc
ggccccaccccggctgaggaggccatggagtaccgggaggagggtcccgagtgtgagacc
ccggccatcttcatcagcatggatgatgactcagggctggccgaaaccacgctcctcgac
tccagtcttgagggtcccctgcttaaggaggcagcagcagtcggacctggccccaaggac
gagcggagtccccagagtctcggccacgctgcggctgcggcggcggaggaagccttggcc
acctccagcccagaggccagggaacccgagagcaaggggaacagctga
DBGET
integrated database retrieval system
