KEGG   Cricetulus griseus (Chinese hamster): 100763688Help
Entry
100763688         CDS       T02813                                 

Gene name
Hdac6
Definition
(RefSeq) histone deacetylase 6 isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
cge  Cricetulus griseus (Chinese hamster)
Pathway
cge05034  Alcoholism
cge05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:cge00001]
 09160 Human Diseases
  09161 Cancers: Overview
   05203 Viral carcinogenesis
    100763688 (Hdac6)
  09165 Substance dependence
   05034 Alcoholism
    100763688 (Hdac6)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:cge01009]
    100763688 (Hdac6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cge03019]
    100763688 (Hdac6)
   04131 Membrane trafficking [BR:cge04131]
    100763688 (Hdac6)
   03036 Chromosome and associated proteins [BR:cge03036]
    100763688 (Hdac6)
Enzymes [BR:cge01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     100763688 (Hdac6)
Protein phosphatases and associated proteins [BR:cge01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100763688 (Hdac6)
Messenger RNA biogenesis [BR:cge03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     100763688 (Hdac6)
Membrane trafficking [BR:cge04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    100763688 (Hdac6)
Chromosome and associated proteins [BR:cge03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     100763688 (Hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var zf-HIT
Motif
Other DBs
NCBI-GeneID: 100763688
NCBI-ProteinID: XP_027289116
LinkDB All DBs
Position
X
AA seq 1148 aa AA seqDB search
MRPTRARTKGPSAMTSTGQDSSTKQRRSRHNPQSPPQDSSATLKRGVKKGTAMHSSPNLA
EVKKKGKMKKLSQAVEEDLIVGLQGLDLNPETRLSVGTGLVFDEQLNDFHCLWDDSFPEC
PERLHAIKEQLILESLLDRCVSFQARFAEKEELMSVHSLEYIDLMETTQYMNEGELRILA
DTYDSVYLHPNSYSCACLATGSVLRLVDAVLGAEIRNGMAVIRPPGHHAQHSLMDGYCMF
NHVAVAARYAQKKHRIQRVLIVDWDVHHGQGTQFIFDQDPSVLYFSIHRYEQGRFWPHLK
ASNWSTTGFGQGQGYTINVPWNQVGMRDADYIAAFLHILLPVAFEFQPQLVLVAAGFDAL
QGDPKGEMAATPAGFAHLTHFLMGLAGGKVILSLEGGYNLHALAKGVSASLHTLLGDPCP
MLESPGAPCASAQTSISCTLEALEPFWEILVKSVEPQEEDEVEEDRVEEEYEEDRWEAAG
LPMDTWPVLQDRTGLVYDEKMMSHCNLWDNHHPETPQRILRIMCHLEEVGLTARCLILPV
RPAMDAELLACHSAEYVDRVRATEKMKTRELHREGANFDSIYICPSTFACAQLATGAACC
LVEAVLSGQVLNGIAIVRPPGHHAEPDAACGFCFFNSVAVAARHAQAIAGRALRILIVDW
DVHHGNGTQHMFEDDPSVLYVSVHRYDHGTFFPMGDEGASSQVGRAAGIGFTVNVPWNGP
RMGDADYLTAWHRLVLPIAYEFNPELVLVSAGFDAAQGDPLGGCQVTPEGYAHLTHLLMG
LANGRIILILEGGYNLASISESMAACTHSLLGDPPPQLTLLRPPQPGALASITETIQVHR
RYWRSLRMMKMEDKEECSSSKPKMTNPVSPMGVTTPKEAVSAKESTLGNAKSETAKAVLA
QDQYSEQAAREATLDQKTSNEPVGGSTTDQHASASATKNVPNQTTSEEAVGETEPIQIPV
ASCADKQTTEASPIQGATAQQAPDQLTGRLSTLTLRTGAQEAPESEEGLLAEAAGGQDMN
SLMLTQGFGNFNAQDVFYAVTPLSWCPHLVAVCPIPATGLDTSQPCETCGTLQENWVCLT
CYQVYCSRYVNAHMVHHHEASEHPLVLSCVDLSTWCYLCQAYVHHQDLQDVKSAAHRNKF
GEDMPHSH
NT seq 3447 nt NT seq  +upstreamnt  +downstreamnt
atgcgcccaacccgtgccaggaccaaaggcccttcagccatgacctccaccggccaagat
tcttctaccaaacaacgaaggagtaggcacaatcctcagtcgcccccccaggactccagc
gccaccttgaaacggggtgttaagaagggtactgcgatgcactccagccccaatctagca
gaggtaaagaagaaaggcaaaatgaagaagctcagccaagctgttgaagaagacctgatc
gtggggcttcaagggctggatctgaaccctgagacaagattatcggttggtactggattg
gtgtttgatgaacaactaaatgacttccactgcctttgggatgacagcttccctgaatgc
cctgagcggctccatgccatcaaagagcagctgatcctggagagcctgctggaccgttgt
gtgtcctttcaggcccggtttgctgagaaggaggagctgatgtcggttcacagcctggaa
tacattgacctgatggaaacaacgcagtacatgaatgaaggagaactccgcatactagca
gatacctatgactcagtttatctgcatccgaactcatattcatgtgcctgcctggccaca
ggctctgtcctgaggctggtagatgcggtcctgggggctgagattcggaatggcatggct
gtcatcaggcctccaggacaccatgcccagcacagtcttatggatgggtattgcatgttc
aaccacgtggctgtggctgcccgctatgctcaaaagaagcaccgcattcagagggttctt
atcgtggactgggatgtgcaccatggtcaaggaacacagttcatcttcgaccaggacccc
agtgtcctctatttctccatccaccgctatgagcagggtcggttctggccccaccttaag
gcttctaactggtccactacaggttttggccaaggccagggatatactatcaatgtacct
tggaaccaggtggggatgcgggatgctgactacattgctgcttttctgcacatcctgctg
ccagttgcctttgagtttcagcctcaactggtcctggtggctgctggatttgatgccctc
caaggagaccccaagggagagatggccgccactccagcaggctttgcccacctaacccat
ttcctcatgggtctggcaggaggcaaggtgattttgtctctggagggtggctataacctc
catgccctggctaagggtgtcagtgcatcactccacactcttcttggagacccttgcccc
atgctggagtcccctggtgcaccttgtgcaagtgcccagacttcaatctcctgcacgcta
gaagcccttgaacccttctgggagatccttgtgaaatcagtcgagccccaggaggaagat
gaagtagaggaagacagggtggaagaagaatatgaggaagatcgctgggaggctgctgga
ctgccaatggatacatggccagtgctacaggatcgcactgggctggtctatgatgaaaag
atgatgagtcactgcaacctatgggacaatcatcaccctgagacacctcagcgcatctta
cggatcatgtgccacctggaggaggtgggcctcacagcacgctgcctcatcctacctgtg
cggcctgccatggatgctgagcttcttgcttgccacagtgccgagtatgtggatcgtgtt
cgggccacagaaaagatgaaaacccgggagctacaccgtgaaggtgccaactttgactcc
atctacatctgccccagcacctttgcctgtgcgcagcttgccacaggggctgcctgctgc
ctcgtggaagctgtgctttcaggacaggtgttgaatggcattgcaatagtgcgtcctcca
ggacaccacgcagaaccagatgctgcttgtggtttctgctttttcaactctgtagctgtg
gctgctcgacatgctcaagccattgctgggcgtgccctgcggatcctgatcgtggactgg
gatgttcatcatggtaatggaactcagcacatgtttgaagatgaccccagtgtattatat
gtgtccgtgcaccggtatgaccatggcactttcttccccatgggggatgagggtgccagt
agccaagtaggccgagctgccggtataggcttcactgtcaatgtgccctggaatgggccc
cgcatgggtgatgctgactacctgactgcctggcatcgtctggtacttcccatcgcctat
gagtttaacccggaactggtactggtttcagctggttttgatgctgcacaaggggaccca
ctggggggctgccaagtgacacctgagggttatgcccaccttactcacctgctgatgggc
cttgccaatggccgcattatccttatcctagagggtggctacaacttggcatctatctct
gaatctatggctgcctgtacccattccctccttggagacccaccaccccagcttaccttg
ctgcgacctccacagccaggagccctggcctcaattactgagaccatccaagtccatcgc
agatactggcgcagtttgcggatgatgaagatggaagacaaggaagaatgctccagttct
aagcccaaaatgaccaatcctgtgtcacctatgggagtgaccacaccaaaagaagcagta
tctgcaaaagaatctactctgggcaatgctaaatcagagacagctaaggcggtgcttgct
caggaccagtactcagaacaagctgctagggaagctacactggaccagaaaacctcaaat
gagcctgtgggaggaagtactacggaccagcatgcctcagcatcagccacaaaaaatgta
cctaaccagaccacctcagaggaggctgtgggagaaactgagccaatccaaattcctgta
gcctcatgcgcagacaagcaaaccacagaagcttcccctatacagggagccacagcccag
caggcccctgaccagctgactgggagactcagcactttgacactacgaactggagctcag
gaggcccctgaatctgaggagggcctactagcagaagcagctggaggtcaggacatgaat
agcttgatgctgacgcaaggatttgggaactttaatgcccaggatgtattttatgctgtg
accccactatcctggtgtccccatttggtggcagtatgccccattcctgcaacaggcctg
gatacatctcaaccatgtgagacctgtggaacgctgcaggagaactgggtgtgtctgact
tgctatcaggtgtactgcagtcgttatgtcaacgcccatatggtccaccaccatgaagcc
tcagaacatccactagtcctcagctgtgttgacctgtctacctggtgttatctctgtcag
gcttatgtccaccaccaggatctccaagatgtgaagagtgctgcccaccggaacaagttt
ggggaggacatgccccactcacactaa

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