KEGG   Cricetulus griseus (Chinese hamster): 100767365Help
Entry
100767365         CDS       T02813                                 

Gene name
Lig1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cge  Cricetulus griseus (Chinese hamster)
Pathway
cge03030  DNA replication
cge03410  Base excision repair
cge03420  Nucleotide excision repair
cge03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cge00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    100767365 (Lig1)
   03410 Base excision repair
    100767365 (Lig1)
   03420 Nucleotide excision repair
    100767365 (Lig1)
   03430 Mismatch repair
    100767365 (Lig1)
Enzymes [BR:cge01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100767365 (Lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     100767365 (Lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     100767365 (Lig1)
DNA replication proteins [BR:cge03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    100767365 (Lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     100767365 (Lig1)
DNA repair and recombination proteins [BR:cge03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     100767365 (Lig1)
   NER (nucleotide excision repair)
    Other NER factors
     100767365 (Lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     100767365 (Lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR
Motif
Other DBs
NCBI-GeneID: 100767365
NCBI-ProteinID: XP_007620988
LinkDB All DBs
Position
5
AA seq 931 aa AA seqDB search
MRKKEPERKGENSAATMQKSIRSFFQPMKEGKAQKPEKETANSTKEKEPPPKVALKERNR
AVPESDSPVKRPGRKAAQVLSSEGEEEDEAPSTPKVQKSVSDSKQSSPPSPDACPENSPF
HSSPSMEISPSGFPKRRTARKQLPKRTIEDTVEEQNEDKGRAAKKRKKEEEAQTPMESLT
ESEDVKPKEEKEEGKHAEASKSPESGTLTKTETIPVCKAGVKQKPQEEEQSKPPARGAKT
LSSFFTPRKPAEKAIVKQEEPGTPGKEETKGALDPTNYNPSKRNYHPIEDACWKHGQKVP
FLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPPDLLPVLYLSLNRLGPPQQGLELG
VGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRLMLPPPPLTTSGVFTKF
CDIARLTGSASMAKKLDAIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALALAVS
LTPPGQEFPPAVVDAGKGKTTEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERL
PEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFS
RNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDA
SEIQVQVCLYAFDLIYLNGESLIRQPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIA
EFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGR
GKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSLKALVLPTPRPYVRIDG
AVAPDHWLDPKVVWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVREDKQPEQAT
TSDQVACLYRKQSQIQNQHNSDLDSDFEDCY
NT seq 2796 nt NT seq  +upstreamnt  +downstreamnt
atgagaaaaaaagaaccagagaggaaaggggagaactctgctgccaccatgcagaaaagt
atcaggtcatttttccaacccatgaaagagggtaaagcacagaagccggagaaggagaca
gctaacagcaccaaagagaaggagccacctccaaaggtggcactgaaggagaggaatcga
gcagtgcctgagagtgattctccagtgaagaggcctggaaggaaggcagcccaggtccta
agcagcgaaggggaggaggaagatgaagcccccagcacccctaaagtccagaagtctgtg
tcagactccaaacaaagctctcctcccagccctgacgcatgtcctgagaacagtcctttc
cacagtagcccctccatggagatctccccatcaggattcccgaagcgtcgcactgctcgg
aagcagctcccgaaacggacaattgaggacactgtggaggagcagaatgaggacaaaggc
agagcagccaagaaaaggaagaaggaagaagaagcacagactccaatggaaagcctcaca
gagagtgaagatgtaaaacccaaggaagaaaaggaggagggcaagcatgctgaggcttcc
aagtcccctgagtcgggaaccttgacaaagacagagaccatcccagtgtgtaaggccggc
gtgaaacagaagcctcaggaagaggagcagagcaagcctcctgccagaggcgccaagaca
ctcagcagcttcttcactccccggaagccagcagagaaagccatagtgaaacaagaagag
ccaggtactccagggaaggaagagaccaagggagccctggatccaacaaattacaatcct
tccaagagaaactaccaccccattgaagatgcctgctggaaacatggccagaaagtccct
tttctcgctgtggcccggacctttgagaagattgaggaggtttctgctcggctcaagatg
gtggagacactgagcaacttgctgcgctcggtggtggccctgtcacctccagacctgctt
cccgttctttacctcagcctcaaccgccttgggccacctcagcagggactagagctgggt
gttggtgatggcgtcctccttaaggcagttgcccaggccacaggccgtcagctggagtcc
atccgggctgaggtggctgagaagggtgacgtgggactggtggccgagaacagccgcagc
actcagagactcatgctgccccctcctccgctcaccacctccggggtctttaccaaattc
tgtgacattgcccggctcactggcagtgcttccatggccaagaagttggatgccatcaag
ggcctgtttgttgcctgccgtcactcggaagcccggttcattgccaggtccctaagtgga
cgcctgcgcctcgggctggctgagcagtccgtcttggctgcccttgccctggctgtgagc
ctcacaccccctggccaagaatttcccccagctgttgtggatgctgggaagggcaagacc
acagaggccagaaagacatggttggaagaacaaggcatgatcttgaagcagaccttctgt
gaggtacctgacctggaccgaatcatcccggtgctgctggaacatggcctggaacgcctc
ccagagcactgcaggctgagcccaggggtccctcttaaaccaatgctggctcatcccact
cggggtgtcagcgaggtactgaaacgctttgaggaggtggactttacctgcgagtacaaa
tatgacgggcagcgggcccagattcatgttctggaaggtggagaggtgaagatcttcagt
aggaaccaggaagacaacacaggaaagtacccggacatcatcagccgcatccccaagatt
aaactcccctcggtcacgtcctttatcctggacactgaggctgtggcctgggaccgggaa
aagaagcagatccagccattccaagtgctcaccacacgcaagcgcaaggaggttgacgcc
tcggagatacaggtgcaggtgtgtctgtatgcctttgatctcatctacctcaatggagag
tccctgattcgccagcccctgtctcgacgtcggcagctgctccgggagaactttgtggag
acagagggtgagtttgtcttcgccacctccctggacaccaaggacatcgagcagatcgct
gagttcttggagcagtcggtgaaggactcctgtgagggactgatggtgaagaccctggat
gttgatgccacctatgagatcgccaagaggtctcacaactggctcaagctaaagaaggac
taccttgacggtgtgggcgacactctggaccttgtggtgattggcgcctacctgggccgg
gggaagcgtgccggccggtatgggggcttcctcttggctgcctatgatgaggagagtgaa
gagctgcaggccatatgcaagctgggaactggattcagtgatgaagagctggaggagcat
caccagagcctaaaggccctagtgttgccgaccccacgcccctatgtgaggatcgatggg
gcagttgccccagaccactggctggacccaaaggtcgtatgggaggtgaagtgtgcggat
ctctccctgtcccctatctaccctgctgcgcggggcctggtggacaaagagaaagggatc
tcccttcgtttccctcggttcattcgtgtccgtgaagacaagcagccagagcaggccacc
accagtgaccaggtggcctgtttgtaccggaagcagagtcagatacagaaccagcacaac
tcagacttggactccgactttgaggactgctattaa

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