KEGG   Cryptococcus gattii: CGB_E3220W
Entry
CGB_E3220W        CDS       T02232                                 
Name
(RefSeq) RNA helicase; Prp16p
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
cgi  Cryptococcus gattii
Pathway
cgi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cgi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CGB_E3220W
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cgi03041]
    CGB_E3220W
Enzymes [BR:cgi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CGB_E3220W
Spliceosome [BR:cgi03041]
 Complex C
  Other components
   Step II factors
    CGB_E3220W
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 T2SSE nSTAND3 AAA_30 SLFN-g3_helicase ATPase AAA_16
Other DBs
NCBI-GeneID: 10190555
NCBI-ProteinID: XP_003194268
UniProt: E6R6Z9
LinkDB
Position
E:join(616069..616134,616187..616286,616343..616587,616644..616821,616877..617484,617542..617655,617706..617981,618034..618115,618166..618345,618393..618550,618601..618673,618730..618861,618916..618977,619026..619236,619287..619442,619499..619646,619701..619863,619914..620227,620280..620423,620474..620552,620610..620655,620702..620749,620803..620971,621029..621185)
AA seq 1302 aa
MSARSPRGAATEDEFSHQIAIEMSRIMNQVNPNDLLGKRIVDIAKGNRTGDAFLRAVSTF
GQFPRDPMLSLHTRILAHLSVLQAQNQSGARRGSGHSPPRMLGGRPAGEHVEGMDHDDTD
TLAPEPVRKGGLRRAGNAPTFKTPATARPSLLGLDKLAAEKRAAAAATADKNGPPSKKAR
KDEGQEDDEQSGGVFKVPAIPVRRDNVRVRPEETPSRGSGLSEEARARLEARRRERNKPS
TGITVSTADREHSKEGLGDFQRRANRERRHERGGDREPRQGEYGRDGQGGRNDWDRRQDG
RDGKPWNEASTPRTSRADRDFDGGSARIPNRGWDETPRGSRGPGGWGKGERTSRGWDQTP
RSARESPEQDGLDLNAKEWEEEQVKLDRDWYSYDDEGAVAADEDHNPFSQWENLERAKEE
ELQAKAVKRRTARQAQFNADNDLWETNRMQTSGVLQRGGADDDFDDDSDSKVHVLVHDLK
PPFLDGTVAYTKQLDPINPVKDGTSDMAIFAKKGSVLVRERRERQEREKAAAKAASIAGT
TLGNLMGVKDEPDLGEEGQKDGVTENYKADSQFSSHLKKSEGVSNFAKTRTLKEQREYLP
AFAVREELMGMIRDHQVLVVIGETGSGKTTQLGQFLYEDGYCANGMIGCTQPRRVAAMSV
AKRVSEEMECTLGETVGYAIRFEDCTSKDTKIKFMTDGVLLRESLNEGDLDRYSVIILDE
AHERSLSTDILMGLLRKILTRRRDLKLIVTSATMNAEKFSQFFGNAATYTIPGRTFPVEI
FHSKSPCEDYVDSAIKQVLQIHLSSSQGDILVFMTGQEDIECCCQVIEERLSQLDDPPPL
AVLPIYSQMPADLQAKIFQPTPDGRRKVVVATNIAETSLTVDGILYVVDAGYSKLKVYNP
KVGMDALQITPISQANCGQRAGRAGRTGPGFCYRLYTETAYLNELFASNIPEIQRTNLAN
TVLLLKSLGVKNLLEFDFMDPPPQENILNSMYQLWVLGALDNVGNLTSVGRKMSDFPMEP
SLAKMLIVSVDYKCSSEMLTIVSMLSVPSVFYRPPQRAEESDAAREKFFVPESDHLTLLH
VYTQWKSNGYSDSWCMKHFLHPKLMRKAREVRGQLEDIMKQQKMDLLSVGTDWDIVRKCI
TAGYFHQAARVKGIGEYMNIRTGLPCVLHPTSALYGLGYMPDYVVYHELVLTSKQYMMCV
TSVDPYWLADLGSVFFSIREKNFDALARARANRDFSKKTEMEAEMARQREEMERAKAEKI
KKEAVAKTPRIGGIGVAYTPKSAGIGAGSRSSATPRRRAGGI
NT seq 3909 nt   +upstreamnt  +downstreamnt
atgtctgccaggtcaccaagaggtgcagcaaccgaagatgagttttcacaccaaattgcc
atcgagatgtcccgaatcatgaatcaggtcaacccaaatgacctccttggtaaacgaata
gtggatatcgcaaaaggcaaccgtactggagatgcatttcttagggctgtttcaacattc
ggccagtttcctagggaccctatgctatctctccacactcgtattctcgcccacctttca
gttctgcaagctcagaaccagtccggagctcgtagaggatctggacattccccacctaga
atgcttggtggtcgacctgctggagaacatgtggagggcatggatcatgacgacaccgat
acattagcacccgagcctgttaggaaaggtggcttaagaagggccggcaatgcaccgact
ttcaagactcccgctaccgctagaccgtcattactgggtctggacaagttagccgctgag
aaacgtgcagcagcggccgccacagcggacaaaaacggcccgccgtctaaaaaggctcga
aaagatgaaggacaagaagatgacgaacaatcaggtggtgtcttcaaagtgcccgccatt
ccggttcgaagggataatgtccgagtgcgacccgaggaaacacccagtcgaggatctggc
ctctcagaagaggctcgcgctcggcttgaagctcggcgtagggaacgcaacaagcccagt
acgggcattacagtgagtactgccgatcgcgaacattcaaaggagggccttggggatttc
cagaggagggcgaatagggaaagacggcatgaacgaggtggagacagagagccgagacag
ggggaatacggcagggatggtcaaggaggccggaatgactgggacagaagacaagatggt
agagatggcaaaccgtggaatgaagcatcgacgcctcgcacctctcgtgcagacagagac
tttgatggcggtagcgcccgtatccccaatcggggttgggatgaaactccacgcggatca
cgaggtcctggggggtggggcaagggagagcgcacatctaggggttgggatcaaactccg
agatcggctagagaatcaccggagcaagacgggttggatcttaacgctaaagaatgggag
gaagagcaagtcaagttggatcgagactggtatagttacgatgatgaaggggcagtggct
gcagatgaagatcataatccgttctcacagtgggagaatttagaaagagcaaaggaggaa
gaactgcaagccaaagctgtcaaacgccgaactgcccgtcaagctcaatttaatgcggat
aatgacctttgggaaacaaatcgaatgcaaacatccggtgttctccaaagaggaggcgct
gatgacgacttcgacgatgactctgattccaaagttcatgttttggtgcatgacctcaaa
cctccctttctggatggtactgtggcgtatacaaaacaacttgatcccatcaatcctgtc
aaagatggcacaagtgacatggctatctttgctaagaaaggaagcgttttggtgagagag
aggagggaaaggcaggagagggaaaaggcggcggcaaaggcggcgtcaatcgcaggtacc
accctaggtaatcttatgggtgtcaaggatgaaccagatctcggtgaagagggtcagaaa
gatggcgtgacagagaattataaggccgattcgcaattttcgagtcatctcaagaaatct
gaaggtgtttcgaactttgcaaagactcgtaccttgaaagagcagcgagaatatttgccg
gcttttgcggtacgagaagagttaatgggaatgatacgagatcaccaagtgcttgtcgtc
atcggagagaccgggtcaggcaaaacaactcagctgggacagtttttgtatgaggacggg
tactgcgcgaacggaatgattgggtgtacccaaccacgtcgtgtcgctgccatgtctgtg
gccaagcgtgtcagcgaggaaatggagtgtacccttggtgaaactgttggctacgccatc
cgtttcgaagactgtacatccaaagataccaaaattaagttcatgacagatggtgtcttg
cttcgagagtcattgaatgaaggcgatttggatcgatatagtgtgatcatccttgacgaa
gcacacgagcgatcgctgagtacagatatcctgatgggtcttttgcgaaaaattctcacc
cgccgacgtgatctcaaactcattgttacctcagctaccatgaacgcggaaaagttctct
caattttttggtaacgctgccacttacactatccctggtcgtaccttccccgtggagatc
ttccattctaaatcaccttgcgaagattacgttgatagcgcaattaagcaagtcctccaa
atccatctatcaagttcgcaaggagatattttggttttcatgacaggtcaagaggatatc
gaatgttgctgtcaagtcatcgaagaacgactgtctcaacttgatgacccaccgcctttg
gctgtgctgccaatctactctcaaatgccagcggacttacaagccaagatcttccagccg
accccagatggccggcgtaaggtcgttgttgctaccaacatcgcggagacttcgctcaca
gttgatggtatcctttatgttgttgacgccggatactcaaaactcaaggtatacaacccc
aaggtcggaatggatgctttgcagatcacgcctatcagtcaagccaactgtggtcaacgt
gctggtcgtgctggtcgtacaggtccgggtttctgttaccggctgtatactgagacagca
tatctcaacgagctgtttgctagcaacatccctgaaatccagaggaccaatttggcaaac
accgttctacttcttaagtcgttgggtgtcaagaatctactcgagtttgattttatggat
ccacctcctcaggaaaacattcttaactcaatgtaccagctctgggtacttggcgctcta
gacaacgtgggcaacttgacctctgttggtcgcaaaatgtccgacttcccaatggaacca
tccctcgccaagatgctcattgtctccgttgactacaaatgttcctctgagatgctcacc
atcgtgtcaatgctgtccgtaccatcagtgttttaccgacctcctcaaagagcagaggag
agtgacgctgccagggaaaagttctttgtgcctgaaagcgaccatttgacactcttacat
gtttacactcagtggaagagcaatgggtacagtgattcttggtgcatgaaacatttcctg
cacccgaagctcatgaggaaggcccgagaggtgcgaggacagttggaggacattatgaag
cagcaaaagatggatcttttgtctgtaggaacagattgggatattgttagaaaatgtatc
actgctggctacttccatcaagcggcgagagttaaaggcattggggagtacatgaacatt
cgaacagggttgccttgtgttcttcatcctacttccgcattgtatggtcttggttatatg
cctgattatgttgtgtatcatgagcttgtattaacgtccaaacaatacatgatgtgtgta
acctcggtggatccgtattggcttgccgatctcggtagcgtctttttttcaattagagag
aaaaacttcgatgctctggctcgcgcacgagcaaacagagactttagcaagaaaacagag
atggaagctgagatggccagacagcgagaggaaatggaaagagcgaaagctgagaagatc
aagaaggaagcagtggcaaagactcccagaattgggggcattggagtagcatatacaccg
aaaagtgcaggtatcggcgcgggatcgaggtcatctgcgacaccgagaagacgagcggga
ggcatttag

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