Chryseobacterium gallinarum: OK18_19310
Help
Entry
OK18_19310 CDS
T03954
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cgn
Chryseobacterium gallinarum
Pathway
cgn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OK18_19310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgn03019
]
OK18_19310
03400 DNA repair and recombination proteins [BR:
cgn03400
]
OK18_19310
Enzymes [BR:
cgn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OK18_19310
Messenger RNA biogenesis [BR:
cgn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OK18_19310
DNA repair and recombination proteins [BR:
cgn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OK18_19310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AKK74477
UniProt:
A0A0G3MBJ0
LinkDB
All DBs
Position
complement(4317017..4319221)
Genome browser
AA seq
734 aa
AA seq
DB search
MSAKKANLSGELKKYFGFSTFKGQQEQIIENLLNGKDIFVLMPTGGGKSLCYQLPALISE
GTAIVVSPLIALMKNQVDAVNGLSSDDGVAHVLNSSLNKTQTKQVFDDIKSGKTKLLYVA
PESLIKDDYLDFLKEVKISFFAIDEAHCISEWGHDFRPEYRNLKMIIDKIANVPVIALTA
TATPKVQDDIQKTLGMTNAMVFKESFNRPNLYYEVCPKINVDKEIVKFINQHKGKSGIVY
CLSRRKVEEFAQLLQVNGINALPYHAGLDQKIRVANQDKFLMEEVDVIVATIAFGMGIDK
PDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYAETSMSRRQYILYYFGESFDPVNGEGAKMCDNSSNPPKLKDATSDLKKV
LELISNTGEKFKAKDLISVIAGKETAVTKSYKLEQNPYFGFGKEEKDNYWKTILRQATVQ
NFLQKDIETYGVLKIAEKGKKMLEGKSKEVFLIAEDREFDLTQAKADSDQIQMQAGGGLD
QNLFNQLKELRKKVAKKHGIPPYTVFMDPSLEDMTVQYPITVEEIMKIYGVGEGKAKKYG
KEFADFIKTYVEDHNIERTQDMVLKQVANKSSHKVFIIQSTDKKIDLEDIARAKNLSMDE
LLKEMERIVYQGTKLNIDYYIEDNFDEDIVDGFMEFMNESESDSMKVLLDEFGDELSDEE
VRMLRIKFISDVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaaaaaaagccaatttatcaggcgaattgaaaaagtattttggattttctaca
tttaaaggacagcaggaacaaatcattgaaaaccttttaaacgggaaagatatttttgta
ctgatgcccacaggaggtgggaaatcattatgttatcaacttccggcactgatttccgaa
ggtacggcaatcgtcgtttcgcccttaatagcattaatgaagaatcaggtagatgcagtg
aatggcctttcatctgatgatggggtagcacatgtattaaattcatcattgaataagaca
cagacaaaacaggtttttgatgacataaaaagcgggaagaccaagcttttgtacgtagct
ccggaatcattgattaaagatgattatctggactttttgaaagaagttaaaatttctttc
ttcgcgattgacgaggcgcactgtatttcagagtgggggcacgacttcagaccggagtac
agaaatttgaaaatgatcattgataaaatcgcaaatgtaccggtgattgctttaacggct
actgccactcccaaggtccaggatgatatccagaaaactttgggaatgactaatgcaatg
gtttttaaagagagcttcaaccgtccgaatctgtattatgaagtatgtcctaaaattaat
gtagataaggaaattgttaaatttatcaaccagcataaaggaaaatcaggaattgtatat
tgcctgagccggagaaaagtagaagagtttgctcagctattgcaggtaaacggaatcaat
gcactcccttatcatgcaggacttgatcaaaagataagagttgccaatcaggataaattc
ctgatggaggaagtagatgtcattgtggcaaccattgctttcggaatgggaattgataaa
ccggacgtacgttttgtgatccattacgacttcccaaaatcgctggaaagttattaccag
gaaaccggaagagcaggaagagacggaggtgaaggacactgcctggctttctacgatcct
aaggatattgaaaaactggagaaatttttagcccaaaaacctgtttcagaaagagaaata
ggattgcagcttctgaatgaagtggtagggtatgccgaaacttcaatgagcagaagacaa
tatatcctttattatttcggagagagctttgatcctgtgaatggagaaggtgcaaaaatg
tgtgataattcgtctaatcccccaaaattgaaggacgctacttccgatttgaaaaaagtt
ttggaacttatcagcaacaccggagaaaagtttaaagccaaagatctgatttctgttatt
gcaggaaaagaaacagcggtaaccaagtcttacaagctggaacaaaatccttatttcggc
tttggaaaagaagagaaagacaattattggaaaacgatcctgagacaggcaactgttcag
aattttttacagaaagatattgaaacctatggggttttaaagattgcagaaaaaggcaaa
aaaatgctggaaggcaaatccaaagaagtctttttaattgctgaagaccgggaatttgac
cttactcaggctaaagccgatagcgatcagatacagatgcaggcgggaggaggtctggat
cagaatctctttaatcaattaaaagagctgaggaaaaaagttgccaaaaaacacgggatc
cctccttatacggtatttatggatccgagtttagaggatatgacggttcagtatcctatc
actgtggaagaaattatgaaaatttacggggtaggagaaggaaaagctaaaaaatacggt
aaggaattcgcagatttcataaaaacctatgtagaagatcacaatatagaacgtacccag
gatatggtattgaaacaggtggctaataaatccagccataaagttttcatcatccagagt
actgataagaaaatcgaccttgaggatattgcgagagctaagaatctttccatggatgag
cttttgaaagaaatggaaagaattgtttaccagggaaccaagctcaatattgattattat
attgaagataattttgatgaagacattgtagatggtttcatggagtttatgaatgaatcc
gaaagtgatagcatgaaggtactgctggatgaattcggggatgagctttccgatgaagag
gtaaggatgctgagaattaaattcattagtgatgttgccaactaa
DBGET
integrated database retrieval system
