KEGG   Chlamydia gallinacea: M787_003120
Entry
M787_003120       CDS       T04276                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
cgz  Chlamydia gallinacea
Pathway
cgz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cgz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M787_003120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cgz03019]
    M787_003120
   03016 Transfer RNA biogenesis [BR:cgz03016]
    M787_003120
Enzymes [BR:cgz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     M787_003120
Messenger RNA biogenesis [BR:cgz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     M787_003120
Transfer RNA biogenesis [BR:cgz03016]
 Prokaryotic type
  tRNA degradation factors
   M787_003120
SSDB
Motif
Pfam: RNB OB_RNB CSD2 RNase_II_C_S1 COG6_N
Other DBs
NCBI-ProteinID: ANG66300
UniProt: A0A173DZE3
LinkDB
Position
complement(679405..681423)
AA seq 672 aa
MKKIKKRRSKKIFKKHTKQILISGTLFVHGKKGFGFVSPDHPDEYPFDIFIPARDLKGAL
DGDHVIVSLLPSSKKGEKRKGVIHEVLSRGKTILVGTITSLLNATTALVCVNALGPDTPV
QATLLPKRSYKLGDRILLSTPEWKKKNESKANPPLKMLEFIGNISNAKSDFLCIKAEYGI
EEDFPEAVIEETTHFSQKHISQALRSRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNNNY
ILGVHIADVSHYVTPHSALDKEASKRCNSIYFPGKVVPMLPSALSDNLCSLKPNVDRLAV
SVFMTFTKAGHLSNYEIFRSVIRSKYRMTYDEVNEIIKKKQAHPISKTLQEMAKLSKKFS
DLREQRGCIHLELPSFTISLDNLQEPVALVETRQTLAHKLIEEFMLKANEVIAYHISHQG
VPLPFRIHESPNDEHLLSFQEMAKAMGFTIPVTPEQEPDYQYLLQTISKGHPLEPILHSQ
FVRSMKTASYSTENKGHYGLKLDFYTHFTSPIRRYIDLIVHRLLFHPLSIEETRLEHIVR
ACSTQERVTAKAEFAFETLKKTRFLSQFLKEQPDTTYTAYIITTNPEGIAFTVPEFFQEG
FIPAAQLPKEYTIKKKTSPEDLPSKIRPGAKISVRLISVDLLRQTITWALVKKTTTIIPK
THKTKSRKKKIK
NT seq 2019 nt   +upstreamnt  +downstreamnt
gtgaaaaaaataaaaaaaagaagatcaaaaaaaatctttaaaaaacatactaagcaaatc
ctaatttcaggaactttattcgttcatggaaaaaaaggtttcggatttgtttctcctgac
catcccgatgagtatccctttgatatctttattcccgcaagagatcttaaaggagctcta
gatggagaccatgttattgtttctcttctccccagctcgaaaaaaggagaaaaaagaaag
ggagtaattcacgaagtcctctccagaggaaaaactattctcgtggggacaattacttct
ttactaaatgcaacaacagctcttgtctgcgtcaatgctttgggaccagatacgcccgta
caagctactctccttcctaagcgttcctataaacttggagatcgaatacttctcagcact
cccgaatggaagaaaaaaaacgaatccaaagccaatcccccattaaaaatgctggaattc
attggaaatatttctaatgcaaaatcagattttctctgcatcaaagcagaatacggcatc
gaagaagattttcccgaagccgtgattgaagaaactacgcatttctctcaaaaacacatt
agtcaagccctacgatctagaaaagatcttcgtgatcttctatgtttcactatcgactcc
attactgctaaagattttgatgacgccgtctccctaacttatgacaataataataactat
atcctcggtgtacatattgctgatgtttctcattatgtcactccgcactcagccttggat
aaagaagctagtaagcgatgcaactcgatttatttcccaggcaaagtagttcccatgtta
ccctcagctctttctgataacctctgcagcttaaaaccgaatgttgatagacttgccgtc
tcagtattcatgacattcacaaaagcaggacacctctcgaactatgagatatttcgtagc
gttatccgtagcaaataccgtatgacgtatgacgaagttaatgagattatcaagaaaaaa
caagcacatcccatttctaaaactctgcaagaaatggcaaaactaagtaaaaaattctct
gatctccgagaacaacgtgggtgtatccatctcgaactaccgtcatttactatctcctta
gataaccttcaagagcctgtagctctagtagaaacgcgacaaacactagcacataaactc
atagaagaattcatgttaaaagctaatgaagtgatcgcttatcatatctcacatcaaggc
gttccactcccatttcgaattcatgagtcccctaatgatgaacaccttctctccttccaa
gaaatggccaaagccatgggatttactattcccgtgacccccgaacaagaaccagattac
cagtaccttctacaaacaatctctaaaggacatcctttagaacctatccttcactcacaa
tttgtacgaagtatgaaaacagcttcttactctacggaaaataaaggacattacggacta
aaactggacttctacactcacttcactagcccaatccgtcgctatatcgacctcattgtc
catcgcctactcttccatcccctatctatagaagaaacacgcttagaacatatcgtacgc
gcctgctcaacacaagaacgtgtcacagcgaaagccgaatttgcatttgaaactctaaaa
aaaacacgcttcctcagccaatttttaaaagaacaaccagacactacctatacagcatat
atcattacaaccaaccccgaaggaattgcattcacagttcccgaatttttccaagaaggc
tttatacctgcagcccaactacctaaagagtataccattaaaaagaaaacatcccccgag
gatctcccaagtaaaatacgtccaggagccaaaatttctgtacgcttaatatctgtggat
cttctaagacaaacgattacctgggctttagttaaaaaaacgacaacgatcatcccgaaa
acacacaaaacaaaaagtcgaaaaaagaaaataaaataa

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