Chelatococcus sp. CO-6: AL346_06745
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Entry
AL346_06745 CDS
T04040
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
chel
Chelatococcus sp. CO-6
Pathway
chel03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
chel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AL346_06745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chel03400
]
AL346_06745
Enzymes [BR:
chel01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AL346_06745
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AL346_06745
DNA repair and recombination proteins [BR:
chel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AL346_06745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ALA17156
LinkDB
All DBs
Position
1427109..1427993
Genome browser
AA seq
294 aa
AA seq
DB search
MPELPEVETVRRGLEPAMVGAGITAVDQRRPDLRFPFPERFAERLQGREVVALGRRAKYL
MADLSGGDILVMHLGMTGRFIVEEAGGALREPGDFYQEAGHNAAHDHVVFRLSNGARITY
NDARRFGFMTLVPRGELDAHPLFRHLGVEPLGNSLDGALVARLFAGRKTPLKAALMDQRL
IAGLGNIYVCEALHRAGLSPLRAAGTLATKAGRPAAAAERLATAIRDVLTEAVAAGGSTL
RDYMKTDGSLGYFQHAFRVYDREHAPCPTPGCRGTVARLVQSGRSTFWCSQCQR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaggtcgagacggtaaggcggggcctcgagccggcgatggtcggc
gccggcatcacggccgtcgaccagcgccggccggacctgcgcttccccttcccggagcgt
ttcgccgagcggctgcagggccgcgaggtcgtcgcgcttggccggcgcgccaaatatctg
atggcggatctctccggcggcgacatcctcgtcatgcatctcggcatgacgggccgcttc
atcgtcgaggaggcgggcggggcgctgcgcgagccgggcgacttctaccaggaggccggc
cacaacgccgcccacgaccatgtcgtgttccggctctccaatggcgcccgcatcacttac
aacgatgcccgccgcttcggcttcatgacgctcgtcccccgcggcgaactcgatgcccat
cccctcttccgccacctgggggtcgagccgctgggcaattccctcgacggcgcgctcgtc
gcccgcctcttcgccggcaggaaaacgccgctcaaggcggcgctcatggaccagcgcctc
atcgccgggctcggcaatatatatgtgtgcgaggcgctgcaccgggccggcctgtcaccc
ctgcgcgccgccggcacgctggcgacgaaggccggccgaccggccgcggcggccgagcgg
ctggcgacggcgatccgcgacgtattgaccgaggccgtcgccgccggcggctcgaccctg
cgcgactacatgaagaccgacggctcgctcggctatttccagcacgccttccgcgtctac
gaccgcgagcatgcgccctgcccgacccccggctgccgcggcaccgtcgcgcggctcgtc
cagtccggccgctccaccttctggtgcagccagtgccagaggtga
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