Caulobacter henricii: AQ619_10330
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Entry
AQ619_10330 CDS
T04110
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
chq
Caulobacter henricii
Pathway
chq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AQ619_10330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chq03019
]
AQ619_10330
03016 Transfer RNA biogenesis [BR:
chq03016
]
AQ619_10330
Enzymes [BR:
chq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AQ619_10330
Messenger RNA biogenesis [BR:
chq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AQ619_10330
Transfer RNA biogenesis [BR:
chq03016
]
Prokaryotic type
tRNA degradation factors
AQ619_10330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
DUF6606
Motif
Other DBs
NCBI-ProteinID:
ALL15299
UniProt:
A0A0P0P3X3
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All DBs
Position
2213432..2215747
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AA seq
771 aa
AA seq
DB search
MAKPRTPKSSKFPAAAKPPAGLPDRETLLAFLRSAGESGKADIARHFGLKGADRRALREM
LRELEAQGALGKRGRKGFAEAGSLPPVGVVDVVDRDADGDMFVKLTRADDDAPIVRLSPA
RNADAGGAPGMGDRLLVRFERLENGELEARLIKKLGQSAHKILGVIRKHRRETRVEPVDR
KSKEVLVLTELDARDLKEGDLVLASVGSAAGRYGPKQGKVLEVVGSEDDPRAASLIAIHS
HGIPVGFSEAAEAEAANAQPPTLQGRDDLRDLPFVTIDPVDARDHDDAVYAHPDPDAGNA
GGWIVWVAIADVAAYVRPGSALDREAREKGNSVYFPDRVEPMLPEVLSNGLCSLREGENR
ATLAVRMVFDSAGRKKSHRFVRGLMRSAAKLSYEQAQAAIDGVIPPDGQDGDKAPPLLDP
ILKPLWAAFRLMGKGREIRSPLAIESDERKIVITREGEIASINRRASLEAHKLIEEMMIQ
ANVSAAESLEAKRTPLIYRVHDTPSQEKVQNLAEFLATLEIKWNKGEAPQTSRFNKLLDE
TRDGPHAAIVNEVVLRTQMQAHYSADNLGHFGLNLAKYAHFTSPIRRYADLIVHRALIRA
LNLGTDGLTDQDVSQIKDTAETITYAERRAMAAERDATDRYIAAFLSDRVGATFNGRITG
VTRFGLFVKLDETGADGLVPVSTLGQEFFVHDERMHALVGERTGKRWPLGLQVEVKLVEA
TPVTGGLLFEMITEPLPADPRAPRPRLGARRQAAVKPRGGLPKGVRRGKRR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaccacgcacgcccaagtcgtcgaaatttcctgccgccgccaagccgcctgcc
ggcctgccggaccgcgagaccctgctggccttcctgcgcagtgcgggcgagagcggcaag
gccgatatcgcccggcacttcgggctgaagggggccgaccgccgggccctgcgggagatg
ctgcgcgaactggaagcccagggcgcgctcggcaagcggggccgcaagggcttcgccgag
gccggctccctgccccccgtgggcgtggtcgatgtcgtggatcgtgacgcggacggcgac
atgttcgtcaagctgacccgggccgatgacgacgcccccatcgtgcgcctctcgcccgcg
cgcaatgccgatgccggcggcgcaccgggcatgggcgatcgcctgctggtccgcttcgag
cgcctcgagaacggcgagctggaagcccggctgatcaagaagctcggccagagcgcgcac
aagatcctcggcgtgatccgcaagcaccgccgcgagacccgggttgaaccggtcgatcgc
aagtccaaggaagtcctggtcctcaccgaactggacgccagggacctcaaggagggtgat
ctggtgctggcctcggtgggttcagccgccggtcgctacggacccaagcagggcaaggtg
ctggaagtggtcggcagcgaggatgatccccgtgcggcctccctgatcgccatccacagc
catggcattccggtgggcttctctgaagccgccgaggccgaggccgccaacgcccagccg
ccgaccctgcaaggccgcgacgacctgcgcgacctgccgttcgtgaccatcgacccggtc
gatgcccgcgaccatgacgatgcggtctatgcccatcccgatcccgacgccggcaatgcg
gggggctggatcgtctgggtggccatcgccgatgtcgccgcctatgtccgcccgggctcg
gccctggaccgcgaggcccgcgaaaagggcaacagcgtctatttccccgaccgggtcgag
ccgatgctgcccgaggtgctgtccaacggcctctgctccctgcgggagggcgagaaccgc
gccaccctggcggtccggatggtgttcgacagcgctggccgcaagaagagccaccgcttc
gtgcgtggcctgatgcgctcggcggcaaagctgtcctatgagcaggcacaggccgccatc
gatggcgtgatcccgcctgacggccaggacggcgacaaggcaccgcccctgctggatccg
atcctcaagccgctgtgggccgccttccgcctgatgggcaagggccgcgagatccgctcg
cccctggcgatcgagagcgacgagcgcaagatcgtcattacccgcgagggcgagatcgcc
tcgatcaaccgccgtgccagtctcgaggcccacaagctgatcgaggagatgatgatccag
gccaatgtcagcgccgctgaaagcctggaagccaagcgcacgccgctgatctatcgcgtc
cacgacacgcccagccaggagaaggttcagaacctggccgagttcctggcgaccctggag
atcaagtggaacaagggtgaggccccgcagacctcgcgcttcaacaagctgctggacgaa
acccgcgacgggccgcacgccgccatcgtcaacgaagtggtgctgcgcacccagatgcag
gcgcactacagcgccgacaatctgggccatttcggcctgaacctggccaagtatgcccac
ttcaccagtccgatccgtcgctatgccgacctgatcgtgcaccgcgccctgatccgggcc
ctgaaccttgggaccgatggcctgaccgaccaggacgtcagccagatcaaggacaccgcc
gagaccattacctatgccgagcgccgggccatggccgccgagcgcgacgccaccgaccgc
tatatcgccgccttcctgtccgaccgtgtgggggcgaccttcaacggccgcattaccggc
gtcacgcggtttggcctgttcgtgaaactggacgagaccggagccgatggtctggtgccg
gtctcgaccctgggccaggagttcttcgtccatgacgagcgcatgcacgccctggtcggg
gagcgcaccggcaagcgctggcccttgggcctacaggttgaggtcaagctggtcgaggcc
accccggtgaccggcggcctgctgttcgagatgatcaccgagcccctgccggccgatccc
cgggcccctcgccctcgcctgggcgcgcggcgtcaggcggcggtcaagccccgcggcggc
ctgcccaagggcgtacggcgcggcaagcggcggtag
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