Chromobacterium paludis: FYK34_14540
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Entry
FYK34_14540 CDS
T06224
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
chrm
Chromobacterium paludis
Pathway
chrm03030
DNA replication
chrm03430
Mismatch repair
chrm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FYK34_14540 (dnaE)
03430 Mismatch repair
FYK34_14540 (dnaE)
03440 Homologous recombination
FYK34_14540 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chrm03032
]
FYK34_14540 (dnaE)
03400 DNA repair and recombination proteins [BR:
chrm03400
]
FYK34_14540 (dnaE)
Enzymes [BR:
chrm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FYK34_14540 (dnaE)
DNA replication proteins [BR:
chrm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FYK34_14540 (dnaE)
DNA repair and recombination proteins [BR:
chrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FYK34_14540 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QEL56692
UniProt:
A0A5C1DJ97
LinkDB
All DBs
Position
3077704..3081144
Genome browser
AA seq
1146 aa
AA seq
DB search
MNAPRFVHLRLHSEFSITDGIVRLDDAVKRAVKEQMPALGVSDLMNLFGMVKFYKTCRNK
GIKPIISADIWLENEEDRDKPYRLLLTAKNREGYRRLCELLTEAFSHNQYRGRAEVKREW
LASGDNSNLLCLSGAHLGDVGIALSMGQRDEARRRAEYWESLFPGAFYLEVQRVDSPQVE
NVVQATLWLAGETALPVVATHPIQFMDKDDFKAHEARVCIAEGYTLGDKRRPRSFNECQH
FLSADEMMARFADIPEALANTVEIAKRCNINVVLGKNYLPLFPTPDGMTLDDFLVHEAKR
GLEERLKQLYPDEAEREARRPEYDARLKFECDTIIQMGFPGYFLIVADFIQWGKANGCPV
GPGRGSGAGSLVAYSLYITDLDPLKYALLFERFLNPERVSMPDFDVDFCQENRWRVIEYT
RRKYGEEAVSQIATFGTMSSKSVIRDVGRVLDLPFGLCDRLSKLIPLEANKPLSLDKAMQ
MEPQIGEIIESEGAQELIELAMKLEDLTRGIGMHAGGVLIAPGKLTDFCPLYIASGEGAS
PVSQFDKDDVEQIGLVKFDFLGLRNLTIIELAQKYIKDITGEDVDVAHLPLDDKDAYKVF
ASANTTAVFQFESTGMKKMLVEAKPSKFEEIIAFVALYRPGPMDLIPDFIQRMHGAKFEY
LHPLLEPVLAPTYGIMVYQEQVMQSAQVCGGYSLGGADLLRRAMGKKKVEEMVAQRAMFV
KGAAEKGLDEAKANEIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHHCAAYMAATMS
TELDNTDQLKVFYDDCQDAKNGITFLPPDVNHGFYRFVPVSRKEIRYALGAIKGTGESAV
NHIVEVREAGGPFTDLFDFCQRTDKKLVNKRVIEALIRAGAFDAIEPNRALLFANVGLAM
EAAEQAHANANQGGLFDMFGDDVAPAVEMAPTRPWSDAVKLAEEKLAIGFYLSSHPFTAY
EKEVRGFIKTPLSRLSPRKEPQLLAGFVTGIRVKVGNRGKMAFVQLDDGTAKLEVSLFAE
SFELNRDKLKEDVVLVVEGKVSEDSFAGPGRLRIIVDKLYSLGEARGRYARGLALQLPAK
PDIARLKSELHPFKSQDAGCLVRLAYSNGQAKGELMLPQEWGVRLDDGLLLALSDWLGEG
KVKVLW
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcacctcgctttgtccatcttcgcctccactcggagttttccatcaccgacggc
atcgtccgcctcgatgacgcggtcaagcgcgccgtcaaggaacagatgcccgcgctaggc
gtgtcggacctgatgaatctgttcggcatggtcaagttctacaagacctgccgcaacaag
ggcatcaagcccatcatctccgccgacatctggctggaaaacgaagaggaccgcgacaag
ccctaccggctgctgctgacggcgaagaaccgcgagggctaccgccgcctgtgcgaacta
ttgaccgaggccttcagccacaaccagtaccgcggccgcgccgaggtcaagcgcgaatgg
ctggcgtccggcgacaacagcaacctgctgtgcctgtccggcgcccatctgggcgacgtc
ggcatcgcgctgtccatgggccagcgcgacgaggcgcgccgccgcgccgaatactgggaa
agcctgttccccggcgccttctatctggaagtccagcgcgtggacagcccgcaggtggag
aacgtggtgcaggccacgctgtggctggcaggcgagacggcattgcccgtcgtcgccacc
caccccatccagttcatggacaaggacgacttcaaggcgcacgaggcgcgggtgtgcatc
gccgaaggctacaccctgggcgacaagcgccggccgcgcagcttcaacgagtgccagcac
ttcctcagcgcggacgagatgatggcgcgcttcgccgacatcccggaggcgctggccaat
accgtggaaatcgccaagcgctgcaatatcaacgtggtgctgggcaagaactacctgccg
ctgttccccacgccggacggcatgacgctggacgacttcctggtgcatgaggccaagcgc
ggcctggaggagcggctgaagcaactgtacccggacgaggccgagcgcgaggcccggcgg
ccggaatacgacgcgcggctgaagttcgagtgcgacaccatcatccagatgggcttcccc
ggctacttcctgatcgtggcggacttcatccagtggggcaaagccaacggctgcccggtg
gggccgggccgcggctccggcgccggctcgctggtggcgtacagcctatacattaccgat
ctggacccgctgaaatacgcgctgctgttcgagcgtttcctgaacccggaacgggtgtcc
atgcccgacttcgacgtggacttctgccaggaaaaccgctggcgcgtgatcgaatacacg
cgccgcaaatacggcgaggaggcggtgagccagatcgccaccttcggcaccatgtcgtcc
aagtcggtgatccgcgacgtcggccgcgtgctggacctgcccttcggcctgtgcgaccgc
ctgtccaagctgatcccgctggaggccaacaagccgctgagcctggacaaggcgatgcag
atggagccgcaaatcggcgaaatcatcgagagcgagggcgcgcaggagctgatcgagctg
gcgatgaagctggaagacctcacccgcggcatcggcatgcacgccggcggcgtgctgatc
gcgccgggcaagctgaccgacttctgcccgctctacatcgccagcggcgaaggcgcctcg
ccggtctctcagtttgacaaggacgacgtggagcagatcggcctggtgaagttcgacttc
ctgggcctgcgcaacctcaccatcatcgagctggcgcaaaagtacatcaaggacatcacc
ggcgaggacgtggacgtcgcccacctgccgctggacgacaaggacgcctacaaggtgttc
gccagcgccaacaccaccgccgtgttccagttcgagtccaccggcatgaagaagatgctg
gtggaggccaaacccagcaagttcgaggaaatcatcgccttcgtggcgctgtaccgtccg
ggcccgatggacctgatcccggacttcatccagcgcatgcacggcgccaagttcgaatac
ctgcacccgctgctggagccggtgctggcgcccacctacggcatcatggtgtatcaggag
caggtgatgcagtcggcgcaggtgtgcggcggctatagcctgggcggcgccgacctgctg
cgccgcgccatgggcaagaagaaggtcgaggagatggtggcgcagcgcgccatgttcgtg
aagggcgcggcggagaagggcctggacgaggccaaggccaacgaaatcttcgactacatg
gagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctacgcgctggtggcc
taccacaccgcctggctcaaggcccaccattgcgcggcctatatggcggcgaccatgtcc
acggaattggacaacaccgaccagctcaaggtgttctacgacgactgccaggacgccaag
aacggcatcaccttcctgccgccggatgtcaaccacggcttctaccgcttcgtgccggtc
agccgcaaggaaatccgctacgcgctgggcgcgatcaagggcaccggcgaatcggcggtc
aaccatatcgtggaagtgcgcgaggccggcggcccgttcaccgacctgttcgacttctgt
cagcgcaccgacaagaagctggtcaacaagcgggtgatcgaggcgctgatccgcgccggc
gccttcgacgccatcgagcccaaccgcgcgctgctgttcgccaacgtcggcctggccatg
gaagcggccgagcaggcgcacgccaacgccaaccagggcggcctgttcgacatgttcggc
gacgacgtggcgccggcggtggaaatggcgcccacccgcccgtggagcgacgcggtgaag
ctggccgaggaaaaactggccatcggcttctacctgtccagccatccgttcaccgcctac
gagaaagaggtgcgcggcttcatcaagaccccgctgtcgcggctgagcccgcgcaaggag
ccgcagctgttggccggcttcgtcaccggcatccgcgtcaaagtgggcaaccgcggcaag
atggccttcgtccagctggacgacggcacggccaagctggaagtcagcttgttcgcggaa
agcttcgagctgaaccgcgacaaactgaaggaggacgtggtgctggtggtggaaggcaag
gtcagcgaagacagcttcgccggtcccggccgcctgcgcatcatcgtcgacaagctatac
agcctgggcgaggctcgcggccgctatgcgcgcggcctggcgctgcagctgccggccaag
cccgacatcgcgcggctgaagtccgagctgcatccgttcaagagccaggacgccggctgc
ctggtacggctggcctacagcaacggccaggccaagggcgagctgatgctgccgcaggaa
tggggcgtgcgcctggatgacggcctgctgctggcgctgagcgattggctgggcgaaggc
aaggtcaaggtgctgtggtag
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integrated database retrieval system
