Chromobacterium paludis: FYK34_17615
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Entry
FYK34_17615 CDS
T06224
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
chrm
Chromobacterium paludis
Brite
KEGG Orthology (KO) [BR:
chrm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chrm03016
]
FYK34_17615 (thpR)
Enzymes [BR:
chrm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
FYK34_17615 (thpR)
Transfer RNA biogenesis [BR:
chrm03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
FYK34_17615 (thpR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QEL57250
UniProt:
A0A5C1DKV7
LinkDB
All DBs
Position
complement(3714617..3715159)
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AA seq
180 aa
AA seq
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MPREMRAFLACLPPDSCLPTLRAWQRQLCQQVGGRALPSRQLHLTLVFLGEVTPLQLLLA
ADCAERAAPALPPAVTLDGCGSWHDVGWCGPGRPPPALRAWVEKLKTELRAAGIAVDARP
YRPHLTLLRSLERPLPQQALPPLTLLLDEVTLFASDLRAGGARHYRLDGWRRAAAPSPDA
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtgagatgcgcgcctttctcgcctgcttgccgccggacagctgcctgcccacg
ctgcgcgcgtggcagcgccagttgtgccagcaggtcggcggtcgcgcgctgccctcgcgg
cagctgcatctgaccctggttttcctgggcgaagtgacgccgctgcaattgctgctggcc
gcggactgcgccgagcgcgcggcgccggccctgccgcccgccgtgacgctggacggttgc
ggcagctggcacgacgtcggctggtgcggtcccggcaggccgccgccagccttgcgcgcc
tgggtggaaaaattgaaaacggaactgcgcgcggccggcatcgcggtggacgcccggccc
tatcggccgcatctgaccttgctgcgaagcctggagcgccccttgccgcagcaggccctg
ccgccgctgaccctgctgctggacgaagtgacgctgttcgcctccgacttgcgcgccggc
ggcgcgcgccattaccggctggacggctggcgccgcgccgccgcgcccagcccggatgcg
tga
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