Cytophaga hutchinsonii: CHU_1313
Help
Entry
CHU_1313 CDS
T00385
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chu
Cytophaga hutchinsonii
Pathway
chu03030
DNA replication
chu03410
Base excision repair
chu03420
Nucleotide excision repair
chu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHU_1313 (ligA)
03410 Base excision repair
CHU_1313 (ligA)
03420 Nucleotide excision repair
CHU_1313 (ligA)
03430 Mismatch repair
CHU_1313 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chu03032
]
CHU_1313 (ligA)
03400 DNA repair and recombination proteins [BR:
chu03400
]
CHU_1313 (ligA)
Enzymes [BR:
chu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CHU_1313 (ligA)
DNA replication proteins [BR:
chu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CHU_1313 (ligA)
DNA repair and recombination proteins [BR:
chu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CHU_1313 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHU_1313 (ligA)
MMR (mismatch excision repair)
DNA ligase
CHU_1313 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CHU_1313 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABG58585
UniProt:
Q11VI1
LinkDB
All DBs
Position
complement(1524308..1526320)
Genome browser
AA seq
670 aa
AA seq
DB search
MNDAQALARIEELNKVLHYHNNLYYQKDTTEISDFEFDTLLQELIELEKQFPLYLKADSP
SQRVGGTVTKEFASISHKYPMLSLSNTYSEEEIREFDERVQKAVGHAVEYVCEMKFDGVA
ISITYKNGMIAQAVTRGDGVRGDDVTNNIKTIKSIPLKIQSATFPEEFEVRGEVYLPYEM
FERINQEREDIGEAALANPRNAASGTVKMQDSGIVAKRALDCFIYSLLQDSNKQPTHAAA
LAQLKEWGFRVSDSYKVCKNVDEIIQYINHWSEERFKLPLATDGIVIKVNDLRLQSELGM
TAKSPRWAIAYKFKAEEASTPILSVEYQVGRTGAVTPVANLAPVHLAGTTVKRATLHNAN
EMERLNLHIGDTVFVEKGGEIIPKITRVDVSKRIAGSQMIPFIQNCPVCDTKLIRIEGEA
AWYCPNDKGCAPQITGKIEHFIQRKAMNIDGIGSETIELLYQKKLIRNVADLYTLTYDQL
IQLDRFGEKSVTNVLNGIEASKQTPFKSVLFAIGIRYVGSTVAEKLALHFKSINALEKAS
IEELLQAPEIGIKIAQSIIEWFSVDTNVQLIEDLKKAGVKLELSEHEILKPESDKFAGKS
FVISGVFENYERDELKDLILKNGGKISSGITGKLNYLVAGENMGPAKLEKAQKLNITILS
EAEFISLLNS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgcgcaggcattggcacgtattgaagaattaaacaaagtccttcattaccac
aacaatctatattatcagaaagacacgacagaaatttcagattttgaattcgacacatta
ttacaggaattaattgaacttgaaaagcaatttccgctgtatctgaaagctgattcccct
tcgcagcgtgtcggcggaaccgttaccaaagaatttgcttccatcagtcataaatacccg
atgctttcactttccaacacctattcggaagaggagatccgggagtttgatgagcgtgta
caaaaagctgttggccatgcagtagaatatgtgtgtgaaatgaaatttgatggggttgcc
ataagcatcacctataagaacggtatgattgcgcaggccgttacccgcggggatggtgtg
cgcggcgacgatgttaccaataacattaaaaccattaaaagtattccgttaaaaattcaa
tcggcaacgtttccggaagaatttgaagtacggggcgaagtatatctgccgtatgaaatg
tttgaacgtatcaatcaggaacgtgaagacattggagaagcggcattggccaatccgcgc
aatgcagcaagcggtacggttaaaatgcaggattcgggtattgttgccaaacgggcactg
gattgttttatctattcactcctgcaggattcgaataaacagccaacgcatgctgctgcg
ctggcacaattaaaagaatggggattcagagtatcggattcgtacaaagtctgtaaaaac
gtagatgaaattatacagtatatcaatcactggagcgaggaacgttttaaacttccgctg
gcaacggatggtattgtgatcaaggtgaatgatctgcggctgcaatcagagctgggcatg
acggctaaaagtccgcgttgggccattgcttataaattcaaagcagaagaagcttccact
cccatcctgtcggttgaatatcaggtgggccgtaccggagccgtaacacctgttgccaat
ctggcgccggtgcatctggcaggaacaacggtgaaacgtgctacactgcataatgccaac
gaaatggagcgtttgaatttacacataggtgatacggtttttgttgaaaaaggcggagaa
atcatcccgaagattacccgtgtggatgtttcaaaacggattgcaggaagccaaatgatt
ccgtttattcagaactgccccgtgtgcgataccaaactgatccgtattgaaggcgaagct
gcctggtattgtccgaatgacaaaggctgcgcgccacagatcacgggcaagatcgaacat
tttattcagcgcaaagcaatgaacattgatggtatcggttcagaaaccattgaactgctg
taccaaaagaagctgatccgcaatgttgcagatctgtatacattaacatacgatcaactc
attcaattagaccgatttggagaaaagtctgtaaccaatgtattgaatggcatagaagca
tccaaacaaacaccttttaaaagcgtgttgtttgccattggtatacgttatgtaggttca
accgtagcggagaagctggcgctgcattttaagagcattaacgcattggagaaagccagt
atagaagaattactgcaggcgcctgaaataggaattaaaatagcgcagagcattattgaa
tggttctctgttgatacaaatgttcaactaatagaagacctgaaaaaagcaggtgtaaaa
ctggaattaagcgaacatgaaattctgaaaccggagtcggataaatttgccggcaaaagt
tttgtcatttcaggcgtatttgaaaactatgaacgggatgaattgaaagatctcatctta
aaaaatgggggtaaaatcagttcaggaattacgggtaaactcaactatctggtagccgga
gagaatatgggacctgccaaattagaaaaagcgcagaaactaaacataactattctttca
gaggcagaatttatttcactcttaaattcatga
DBGET
integrated database retrieval system
