Cytophaga hutchinsonii: CHU_2232
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Entry
CHU_2232 CDS
T00385
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chu
Cytophaga hutchinsonii
Pathway
chu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHU_2232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chu03019
]
CHU_2232
03400 DNA repair and recombination proteins [BR:
chu03400
]
CHU_2232
Enzymes [BR:
chu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHU_2232
Messenger RNA biogenesis [BR:
chu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHU_2232
DNA repair and recombination proteins [BR:
chu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CHU_2232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABG59495
UniProt:
A0A6N4SSU7
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Position
complement(2599072..2600976)
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AA seq
634 aa
AA seq
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MSASIHEILKTYWGHSNFRPLQEDIINSILGGNDTVALLPTGGGKSICYQVPALARDGLV
LVISPLIALMKDQVEQLRRRGIIATAIHSGLRKTEIDIALDNCIYGNIKLLYVSPERLKS
DLFKERVEKMKIICIAIDEAHCISEWGHDFRPAYREIASIRTLLPEVPVIALTATANEMV
LNDIMDQLALQNPQIFTQSFTRKNLSYSCLYEENKEKRLVSMLQKIPGVCIVYANTRARV
VRIAEFLNRQGIPTEFYHGGLDHKQRSIKQDAFMKNTVRVMVATNAFGMGVDKPDVRLVV
HMDVPDSLEGYFQEAGRAGRDGNKAFAVLLHTKKDEEELLAKIPVAHPSPEVIRRMYQSL
ANYYQLAVGSGYMESYPFDLDEFCKKYNHNKLEAFYSLKRMEQHGIIQLSEAFYNPPKLK
VIVDHEHLYDARLKMPKYDEFIKQLLRIFGGEVYTAYREFSFSTLAKSTLTPESEIVSKI
KFLVQSGIIDFIDASDVPQLTFLLPRQDAPKLQLDLQWLEDRKDHDQESAENMIGFLHTQ
GCRAQYVLEYFGEYNAAPCGICDRCISKARNKEYYDHTAMVVQQTLQTKNIPIEELEKEF
AGLDKNIVLDIIRTLMDTSKVKIDDTGRYLWVKK
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcttctatacatgaaattctcaaaacctattggggccattcaaactttcgtccg
cttcaggaggatatcataaattctattttaggaggcaatgacaccgttgcgcttttacca
acgggcggaggcaaatctatttgctatcaggtgcccgccctggcaagagatggattggta
ttggttatcagtccgctcattgcattaatgaaagaccaggtagaacagttgcgccgtaga
ggcattattgctacagcaatccattcaggcctgcgcaaaacagaaatcgatattgcactt
gataattgtatttatggaaatataaaattgctgtacgtttctcctgaacggttaaaatct
gatctgtttaaagagcgtgtagagaagatgaagatcatttgtattgctatcgatgaagcg
cattgtatctccgaatggggccatgatttcagacctgcttacagggagatcgcatcaatc
cgtacgctgcttcctgaagtgcctgtgattgcacttactgctacggccaatgaaatggtg
ctgaatgatatcatggatcaactggcgctccagaatccgcagatatttacacaaagtttt
acccgtaaaaatttatcgtactcgtgcttgtacgaagagaataaagagaaacgacttgtg
tcgatgctgcaaaagattcccggcgtatgtatcgtatatgccaatacccgcgcacgtgtg
gtaaggattgcggagtttctgaatcggcagggcattccaacagaattctatcacggcgga
cttgatcataagcaacgcagcattaagcaggacgcatttatgaaaaataccgtacgtgta
atggttgctaccaatgcattcggtatgggcgttgacaagcccgatgtgcgactggttgtg
catatggatgtacccgattcactggaaggttattttcaggaagccggcagggcaggacgt
gacggtaataaagcctttgctgttttgctgcatacaaagaaagacgaagaggaattgctg
gctaaaattcccgtggcacacccatctcccgaagtgatccggagaatgtatcaatcgctg
gcaaactattatcaactggcagtaggcagtgggtatatggaaagttatccgttcgattta
gacgaattctgcaaaaaatataatcacaataaattagaggcattctattccttaaagcgg
atggagcagcatgggattatccagctcagtgaagcattctacaatccacccaaattaaag
gtaattgtagatcatgagcatctgtatgatgcccgtttgaaaatgcctaagtatgatgaa
tttattaagcagttattgcggatctttggaggtgaagtatatacagcataccgcgagttc
tctttttcaaccttggcaaaatcaaccttaacacctgaatctgaaattgtaagtaaaata
aaatttctggtgcagagcggtatcattgattttattgatgccagtgatgttccgcagctt
acgtttttattgcctcggcaggatgcaccaaaattacaattagatctgcaatggctggaa
gaccgtaaagaccacgatcaggaaagcgcagaaaacatgatcggctttctgcatacacaa
ggctgccgggcgcaatatgtactggaatatttcggtgaatacaatgcagcaccttgtggt
atctgcgaccgctgtatcagtaaggcacgtaacaaagaatattatgaccatactgcaatg
gtagtgcagcaaacactgcaaacgaaaaacattccgatcgaagaacttgaaaaagagttt
gctggcttagataaaaatattgtgcttgacattatccgtacgttgatggatacttctaaa
gttaagatcgatgatacaggtaggtatttgtgggtgaaaaagtaa
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