KEGG   Capra hircus (goat): 102182624
Entry
102182624         CDS       T02910                                 
Symbol
VPS4A
Name
(RefSeq) vacuolar protein sorting-associated protein 4A isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
chx  Capra hircus (goat)
Pathway
chx03250  Viral life cycle - HIV-1
chx04144  Endocytosis
chx04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:chx00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    102182624 (VPS4A)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    102182624 (VPS4A)
  09143 Cell growth and death
   04217 Necroptosis
    102182624 (VPS4A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:chx04131]
    102182624 (VPS4A)
   03400 DNA repair and recombination proteins [BR:chx03400]
    102182624 (VPS4A)
Membrane trafficking [BR:chx04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    102182624 (VPS4A)
DNA repair and recombination proteins [BR:chx03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    102182624 (VPS4A)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 AAA_14 AAA_16 AAA_22 AAA_25 AAA_5 RuvB_N IstB_IS21 AAA_17 AAA_18 DUF815 AAA_2 AAA_33 nSTAND3 RNA_helicase AAA_24 PhoH ResIII AAA_28 AAA_7 Mg_chelatase NACHT Parvo_NS1 bpMoxR DUF5906 YhdB AAA_30 TPR_2
Other DBs
NCBI-GeneID: 102182624
NCBI-ProteinID: XP_017917698
EnsemblRapid: ENSCHIG00000011388
UniProt: A0A452E851
LinkDB
Position
18:37727075..37737864
AA seq 437 aa
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC
MQYLDRAEKLKDYLRNKEKHGKKPVKENQSESKGSDSDSEGDNPEKKKLQEQLMGAVVME
KPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENE
SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARA
QMFRLHLGSTPHNLTEANIHELARKTEGYSGADISVIVRDSLMQPVRKVQSATHFKKVCG
PSRTNPSIMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNA
EDLLKVKKFSEDFGQES
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgacaacgtcaaccctccagaaagccattgatctggtgacaaaagccacagaagaggat
aaagccaagaattacgaggaggcgctccggctctaccagcatgccgtggagtacttcctg
cacgctatcaaatatgaagcacacagtgacaaagccaaggagagcattcgagccaagtgc
atgcagtacctggaccgggcggagaagctgaaggattacttacgaaacaaagagaagcat
ggcaagaagccagtcaaggagaatcaaagcgagagtaagggcagcgatagtgacagtgaa
ggggataatccagagaaaaagaaattgcaagagcagctgatgggtgccgtcgtgatggag
aagcccaacatccggtggaatgatgtggctgggctggagggagccaaggaggccctcaaa
gaagctgtcattttgccaattaaattcccgcacttgttcacaggcaagcgtaccccttgg
cgggggatactgctctttggaccgcccggcacagggaaatcctacctggccaaagcagtg
gcaacggaggccaacaactccaccttcttctctgtgtcctcctcagacttgatgtctaag
tggctgggggagagcgagaagctagtcaagaacctgttcgagctggcccggcagcacaag
ccctccatcatcttcatcgacgaggtggattcactctgtggatcccgcaacgagaatgag
agcgaggctgcccgcaggatcaaaacggagttcctagtccagatgcagggggtggggaac
aacaatgatgggactctggtgctaggtgccacaaacatcccgtgggtgttggactcagcc
attagaaggaggtttgaaaagcgaatttatatcccattgccggaggaggctgcccgtgcc
cagatgttccgattgcatctggggagcactcctcacaacctcacagaggccaacatccac
gagctggcccggaagacagaaggctactcgggcgcagacatcagtgtcattgtgcgggac
tccctcatgcagcctgtgaggaaagtgcagtcagcaacacacttcaaaaaggtctgtggc
ccttcccgcaccaaccctagcattatgatcgatgacctcctgaccccatgctcaccgggg
gacccaggggccatggagatgacttggatggacgtccctggtgacaaactcctagagcct
gtggtttgcatgtcggacatgctccggtccttggccaccactcggcccactgtgaatgca
gaagacctcctgaaagtgaagaagttctcagaggactttggacaggagagttaa

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