Chryseobacterium sp. StRB126: CHSO_0551
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Entry
CHSO_0551 CDS
T03602
Name
(GenBank) RNAse r
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
chz
Chryseobacterium sp. StRB126
Pathway
chz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHSO_0551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chz03019
]
CHSO_0551
03016 Transfer RNA biogenesis [BR:
chz03016
]
CHSO_0551
Enzymes [BR:
chz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CHSO_0551
Messenger RNA biogenesis [BR:
chz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CHSO_0551
Transfer RNA biogenesis [BR:
chz03016
]
Prokaryotic type
tRNA degradation factors
CHSO_0551
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
BAP29588
UniProt:
A0A077KEF4
LinkDB
All DBs
Position
674220..676373
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AA seq
717 aa
AA seq
DB search
MPKKRKYISHKNDLKLMEIGRLILRFMNANASKIYNYKQIADGIDYKNPRQRELVIQALH
KLQGSEKIKEVERGKYIVNLKIAGTLTGIIDFNQSGNAYVKVEGLEDDVFVHAKNVKDAL
QGDKVLIITYHYKGKKLEGSVLEVLERNRTEFVGTFQKVAHKDFGFVVCDKRSINTDIFI
PKTKFNNAGDGDKVIVKMTEWRPGDKNPEGEITQVLGAPGEHETEIHSILAEYGLPYEFP
PEVEQDADKIDRSITDEEVAKRWDMRNICTFTIDPKDAKDFDDALSIRKLENGHWEIGVH
IADVSHYVVPGTILDDEAYKRATSVYLVDRVVPMLPEVLSNDVCSLRPHEDKYTFSAVFE
LNDQAEIQKQWFGRTVIHSDRRFTYEEAQERIETGQGDLAEEINVLDRLAKIMRNERIRN
GAITFDRSEVRFNLDENNEPIGVYFKISKDSNHLIEEFMLLANKKVSEFVSLNKKGDITQ
NTFIYRVHDDPDPAKLESLRDFVSTFGYKMNLANTKKVAESLNKLLHDVKGKGEENMIET
LAMRSMSKAVYSTEPIGHYGLGFDYYSHFTSPIRRYPDLLAHRLLQHYLDGGKSPNRPEL
EEKAKHCSSMERLAADAERDSIKFMQVKFMEKHLGETFTGVISGVAEFGFWVEIPENGAE
GLIKLRDLVDDSYMYDAKTHAVYGVRHGNKYQLGDQVQIKVVKANLIQKQLDFKIVE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaaaaagaaaatatataagtcataaaaatgatttgaaactgatggagatcgga
agactgatccttcgtttcatgaatgcaaacgcatcaaaaatttataattataagcagatt
gctgacggaatagattacaaaaatccaagacaaagggaacttgtaatccaggcactgcat
aaacttcagggatcggaaaagattaaagaagtagaaagaggaaagtatatcgtaaacctg
aaaattgcaggaacgttaaccggaattatcgatttcaaccaaagcggaaatgcttacgtt
aaggtagaaggattagaagatgatgtcttcgttcacgccaaaaatgtaaaggatgcccta
cagggagataaggttcttattataacttatcattataaaggaaagaaactggaaggttca
gttttggaggttttagagcgaaaccggacagagtttgtggggacttttcagaaggtagcc
cacaaggatttcgggtttgtggtttgcgacaaaagatcaatcaatacagatatctttatt
ccaaagacaaaattcaataatgcaggggatggagataaggtcattgtaaagatgacagaa
tggagacctggagataaaaatcctgaaggagaaattacacaagtactgggtgctcccgga
gaacatgaaacagagatacactctattcttgcagaatatggcttgccttatgagtttcca
ccggaagtagaacaagatgcggataagatagacagaagcattacggatgaagaagtagca
aaacgttgggatatgcgtaatatctgtacgtttaccattgaccctaaggatgcgaaagac
tttgatgatgcactatctatcagaaaactggaaaatggacactgggaaatcggggttcac
attgccgatgtatcccattatgtcgttccgggaacaatacttgatgatgaagcatataag
agagcaacgtcggtgtatttggtagacagagtagttccgatgctgccggaagtgttgagt
aatgatgtatgttctcttcgcccacatgaagataaatatactttctctgcagtttttgaa
ctgaacgatcaggcagaaattcaaaagcaatggtttggaagaacggtgattcattcagac
agaagatttacctatgaagaagctcaggaacgtattgaaactggccaaggagatttggct
gaggaaatcaatgtacttgacagattggctaagatcatgcgtaatgaacgtatcagaaat
ggagctattacttttgacagaagtgaagtaagattcaatttagatgaaaataatgagccg
attggagtgtattttaaaatcagtaaagattccaatcacctgatcgaagaattcatgctt
ttggccaataaaaaagtatcagagtttgtatcgctaaataagaaaggagatattactcaa
aatacatttatttacagggttcacgatgatccggatcctgcaaagctggaatcattaaga
gactttgtgtctactttcggatacaagatgaaccttgccaataccaaaaaggttgctgaa
tctttgaataagcttcttcatgatgtaaaaggaaaaggagaagaaaatatgatagaaacc
cttgctatgagaagcatgagtaaggcggtatattctacagagcctatcggacattacgga
cttgggtttgattattatagtcacttcacctctcctatccgtcgttatccggatttgctt
gcccaccgtcttcttcaacattatctggacggaggaaaatctccaaacagaccggaatta
gaagaaaaagcaaaacactgcagctctatggaaagattggctgctgatgcagaaagagat
tccatcaagttcatgcaggtaaaatttatggaaaaacatcttggtgaaacgttcacagga
gttatttccggagtggcagaatttggattctgggtagaaattcctgaaaacggagctgaa
ggtcttattaagttaagagatttggtggacgattcttatatgtatgatgcgaaaacacat
gccgtatacggagttagacacggaaataaataccagttaggagatcaggttcagattaaa
gttgtaaaagcaaatctgatccaaaaacaattggattttaagattgttgagtaa
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