KEGG   Citrus clementina (mandarin orange): CICLE_v10010910mgHelp
Entry
CICLE_v10010910mg CDS       T02982                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cic  Citrus clementina (mandarin orange)
Pathway
cic03030  DNA replication
cic03410  Base excision repair
cic03420  Nucleotide excision repair
cic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CICLE_v10010910mg
   03410 Base excision repair
    CICLE_v10010910mg
   03420 Nucleotide excision repair
    CICLE_v10010910mg
   03430 Mismatch repair
    CICLE_v10010910mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cic03032]
    CICLE_v10010910mg
   03400 DNA repair and recombination proteins [BR:cic03400]
    CICLE_v10010910mg
Enzymes [BR:cic01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CICLE_v10010910mg
    6.5.1.6  DNA ligase (ATP or NAD+)
     CICLE_v10010910mg
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CICLE_v10010910mg
DNA replication proteins [BR:cic03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CICLE_v10010910mg
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CICLE_v10010910mg
DNA repair and recombination proteins [BR:cic03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CICLE_v10010910mg
   NER (nucleotide excision repair)
    Other NER factors
     CICLE_v10010910mg
   MMR (mismatch excision repair)
    Other MMR factors
     CICLE_v10010910mg
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DRMBL UBA_4 DNA_ligase_A_C RMMBL Lactamase_B_2
Motif
Other DBs
NCBI-GeneID: 18039451
NCBI-ProteinID: XP_006430690
UniProt: V4SXY8
LinkDB All DBs
Position
Unknown
AA seq 1306 aa AA seqDB search
MDSHPSDKNLTLDSTHLFLSTQSSPPDSLIFPPIPRTFPPSKHVPNTRFLIDAFRYAADF
SVSYFLSHFHSDHYTGLSPSWSKGIIFCSEITSRLLSQILNINPKFIYPLPIKIPVLIDG
CEVVLVGANHCPGAVQFLFKVPGRNDGFERYVHTGDFRFCKTMLLQPVMNEFAGCDAVFL
DTTYCNPKFLFPLQEESVEYVVSVINRVGGELNEGLQKRVLFLVATYVIGKEKILIEIFK
KCGRKVCVDSRKMEVLRVLGYGDSGVFTEDESETDVHVVGWNVLGETWPYFRPNFVRMKE
IMVERGYDKVVGFVPTGWTYEVKRNKFAVRSKDAFEIHLVPYSEHSNYDELREYVKFLKP
KRVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEGAGS
GSNEGLSKEGEVKSKKTKATEDSSSSILLDSSSRLEEFGSKDVTALDDEETEKMVQEIRN
CLPTWVTQNQILDLISSSGRNIVDAVSNFYEHETQLYEQVSACTTFISASRTSSLDVSAS
TAKLNSDKTISQGSVKIPLSQEYKLPTIKHSIKSTLSPSKRKKTVTNNPKKKGKVPSKME
SSGAKQPTITSFFNKLLPNMSQGDGIESKSEECPKDENPLQSNAIKTYGEEIDQFLKIIN
GNESLKGYAATLLEKTKGNVSMALDLYYDNQEGDRGKTVNRLEFSKSSVQSDSCNKDCSS
ALEKIVSEELQHITDMSVQRPSKELMDPTLVSLPPEKYDPIEHACWSSGQPAPYIHLART
FDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVT
SAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQT
GSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMMRTILPALAQAVVMNSSLEF
SHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSSSTLSMVPGVPIKPM
LAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLIS
IINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVF
VFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEADDNCLTSDVTLTKI
NNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSWLKVKRDYVEGLNDSLDLVPIGAWHG
NGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEDSKLLA
NT seq 3921 nt NT seq  +upstreamnt  +downstreamnt
atggactctcatcccagtgacaaaaacttaaccctagactcaacccacctcttcctctcc
acccaatcttcccctcccgattccctcattttccctccaattccccgcactttccctcct
tccaaacacgttcccaacacccgcttcctcatcgacgcctttcgctacgccgccgatttc
tccgtctcttactttctctcccacttccactccgatcactacaccggcctttccccttct
tggtccaaaggtatcattttttgctccgaaatcacttcccgccttctttctcagatactc
aacataaaccccaagtttatttacccactcccaattaagatacctgttttaattgatggg
tgtgaagttgttcttgttggtgccaatcattgccctggtgccgtccagttcttgttcaag
gttccgggcagaaatgacggtttcgagaggtatgttcacacgggtgattttcggttttgt
aaaactatgttgttacagcctgtgatgaatgagttcgcgggttgtgatgctgtcttttta
gacactacttattgtaatccgaagtttttgtttcctttgcaagaagagagtgttgagtat
gtggttagtgtgattaatagggttggaggcgagcttaatgagggtttgcagaagagggtt
ctgtttcttgttgcgacgtatgttattgggaaagaaaagattttgatcgaaatttttaag
aaatgtggtagaaaagtgtgtgtggattcaagaaaaatggaggttttgcgggttttgggg
tatggggatagtggtgtttttacagaggatgagagtgagactgatgtgcatgttgttgga
tggaatgtgttgggggagacttggccatactttcggccgaattttgtgagaatgaaggaa
attatggtcgaaagagggtatgataaggttgttggttttgtgcctacggggtggacttat
gaggtgaagcgtaacaagttcgcagtgaggtccaaggatgcatttgaaattcatcttgtc
ccatatagtgagcattcaaattatgatgagcttagggagtatgtgaagtttttgaaaccc
aagcgggttatacctacggtgggcatggatattgagaagcttgatagcaagcatgctaat
aaaatgagaaagtattttgccgggttggttgatgaaatggctagcaagaaagaattttta
atgggttttcatcgagggaccagtgaaattgatgaaaacgttgaagagggtgctggttca
ggctctaatgaggggctgagcaaagagggggaagtaaagtcgaaaaaaactaaagccact
gaagacagcagttcatctattcttttagattcatcatctcgtttggaagaatttggctca
aaagatgtaactgctctagatgacgaggaaacagagaaaatggtacaagaaattcgtaac
tgtttgcctacatgggttactcaaaaccaaatattggatttgattagcagctcaggaagg
aacattgttgacgctgtgtctaatttctacgaacatgaaactcaattgtatgagcaagtc
tctgcatgtacgacttttatatctgcatcccggaccagctcacttgatgtttctgcatcc
actgcaaaactaaattccgataagaccatttctcaaggaagtgtgaaaattcctttaagt
caggaatacaagttaccaaccataaagcattcaataaagagcaccctttctccaagcaaa
aggaagaaaactgttaccaataaccctaagaaaaaagggaaagtcccatcaaaaatggaa
tctagtggggcaaagcagcctacaattacaagtttcttcaataaattgttgcctaacatg
tctcaaggggatgggattgaatccaagtcagaggaatgccctaaagatgaaaatcctttg
caaagtaatgctatcaaaacatatggagaggagatagatcagttcttgaagataatcaat
ggcaatgaatcattaaaaggctatgctgccaccctcttagagaagacaaaaggaaatgtt
agtatggctctagatctatattatgataatcaagagggtgatcgtggtaagactgtaaat
aggttagaattctctaaaagttcagttcagtcagacagttgtaataaggattgttcttct
gcattggagaaaattgtttctgaagaattgcaacatataactgatatgtctgttcagaga
ccatcaaaagaactaatggatccaactcttgtgtcgttaccacctgaaaagtacgatcca
atagagcatgcatgctggagtagtggacagcctgctccatatatccaccttgcacgaact
tttgacctggttgaggctgaaagaggcaagataaaagctatgtccatgttgtgcaatatg
tttagaagtttgctggccctgtctcctgacgatgtgctacctgccgtgtatttgtgtacc
aataagattgcctctaaccatgaaaacatagaactgaacattggtggaagtttggtcaca
tcagcaatagaagaggcatgtggaactaatcggtctaaaattagggatatgtacaatagg
ttaggtgaccttggtgacgttgctcaagaatgccgacaaacacaggcattgcttgctcct
cctcctccacttcttatcaaagatgtatattctatgctttgcaaaataagtgtacaaaca
ggtagtggaagtactgctaggaagaaaagccttattgtgaacctcatgtgttcttgtaga
gagaaggagatgaagtttctggttagaactctggtcaggaatttacgaattggagcaatg
atgagaactatattgcctgcattggctcaagctgttgttatgaattcttctctcgagttt
tcccatgaaggaaaaatggaaaatttgaaggagaagcttcagagtctttctgcagcggca
gttgaagcttataatattcttcccagtttggatttgctcattccttctctcatgaataaa
ggcattggattttcatcatcaactttgtccatggttccaggagtacctatcaagcccatg
cttgcaaaaattaccaatggagttccacaagtactaaagctcttccaaaataaagcattt
acttgtgagtacaaatatgatggtcaacgtgcccaaattcacaaattagtggatggcact
gtgcgcatcttttcacgtaatggtgatgaaacaacatcaagatttcctgatttaattagt
ataattaatgaattttgtaagcctgctgcggggactttcatactggatgccgaggtagtt
gcaattgataggaagaatggctgcaaaatcatgtctttccaagaactatcgtcgagagag
agagggggaaaagattccgtgatcacaattaagagtgtaaaggtcgatatttgtgtattt
gtctttgatatcatgtttgccaatggagagcagctgctgggttataccctccgtcagaga
cgaaaatacttgaaagatttgttctatgatgagaaaatggggtactttcagtatgcaaag
gaaatgactgtggaagctgatgataattgtttgacgagtgatgtcactctaaccaagata
aataattttctcgaagaggcactccactcctcatgtgaagggattatcgttaaatcacta
gatgttgatgctggatattctccatcaaagcgtagtgactcatggttaaaggtgaagcga
gattatgtggaaggattaaacgactcgcttgatctagtccctattggtgcttggcatggc
aatggaaggaaagcaggatggtacagtccattcctcatggcatgttacaatcccgagact
gaggaatatcaaagcgtatgccgtgtcatgtctgggttctcagattccttttacatagag
gattcaaaattgctagcgtga

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