KEGG   Citrus clementina (mandarin orange): CICLE_v10027871mgHelp
Entry
CICLE_v10027871mg CDS       T02982                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cic  Citrus clementina (mandarin orange)
Pathway
cic03030  DNA replication
cic03410  Base excision repair
cic03420  Nucleotide excision repair
cic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CICLE_v10027871mg
   03410 Base excision repair
    CICLE_v10027871mg
   03420 Nucleotide excision repair
    CICLE_v10027871mg
   03430 Mismatch repair
    CICLE_v10027871mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cic03032]
    CICLE_v10027871mg
   03400 DNA repair and recombination proteins [BR:cic03400]
    CICLE_v10027871mg
Enzymes [BR:cic01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CICLE_v10027871mg
    6.5.1.6  DNA ligase (ATP or NAD+)
     CICLE_v10027871mg
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CICLE_v10027871mg
DNA replication proteins [BR:cic03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CICLE_v10027871mg
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CICLE_v10027871mg
DNA repair and recombination proteins [BR:cic03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CICLE_v10027871mg
   NER (nucleotide excision repair)
    Other NER factors
     CICLE_v10027871mg
   MMR (mismatch excision repair)
    Other MMR factors
     CICLE_v10027871mg
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 18034907
NCBI-ProteinID: XP_006424457
UniProt: V4SB42
LinkDB All DBs
Position
Unknown
AA seq 754 aa AA seqDB search
MSSSAPNAFQVLMSAAAKKKPSPQPNSSSSSSSPKKRRTLDTQNPKTTNSVVGDKIQEVA
EEPSNDLVKPISNQIDNPTDSEKESQPTPSPPKKRKVNVNSVSAKEKVAELKSNIVLLKK
KAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRIVITDIVCNMLRTVMETTPEDLV
PVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRS
SQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQS
KLRIGLAEQTLLAALGQATVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPAL
LTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLE
DGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLST
RARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLT
SNDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLV
PIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP
RPYYRFADTLSPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVRE
DKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD
NT seq 2265 nt NT seq  +upstreamnt  +downstreamnt
atgtcctcctctgctcccaacgctttccaagttctcatgtccgccgccgcaaaaaagaaa
ccatcgcctcaacccaattcctcttcttcttcttcttctcctaaaaagcgcagaacccta
gacacccaaaaccctaaaacgacgaattcagttgtaggtgacaaaattcaagaagtcgct
gaagaacccagtaacgatctcgtaaaacccatttcgaatcaaattgataatcccacagat
tctgagaaggaatcccaacccactccttcaccacctaaaaaacgcaaagtcaatgtgaat
tcggtgagtgctaaggagaaggttgcggaattgaagagcaatattgtgttattgaagaag
aaagcgggtgaatttgatcccaaaatggttgcatgttgggaaaagggagagagggtgccg
tttatttttctgagtttggtgtttgacatgatatcgaatgaaactgggcggatagtaatt
actgatattgtgtgtaatatgttgaggacggttatggaaacgacgcctgaggatttggtg
ccggttgtttatttggccgccaataagattgcaccagctcatgagggactggagctggga
attggggatgcttctattataaaggcgcttgcggaggcctgtggaaggaccgaatctcac
gttaagaagcaataccaggaaatgggagatctgggtcttgttgccaaggccagtcggtcc
tctcaatctatgatgcgcaagcctgacccattaaccattaccaaagtttttgatacattt
cggctcattgctaaggaagctgggaaggatagccaagagaagaaaaagaatcgaatcaag
gcacttcttgttgcagccactgactgtgaacctcaatatttgattcgtcttctccagtca
aagttgcgaattggattagcagagcagactctcttagctgcattgggacaagctactgtt
tataatgaacagcattctaaacctcctccaaacattcaatcccctttagaggaggctgca
aagattgttaagcaagttttctcggtacttcctgtttatgaaaagattgtccctgcactt
cttactgatggcgtatggaatctttcaaatacatgcagctttacgccaggcatcccaatt
ggacccatgttagcaaaaccaaccaaaggggtctctgagattgtaaacaagttccaagat
atggaattcacatgtgaatacaaatatgatggagagcgagcccaaatacattatttggag
gatggttctgttgagatatatagtcgaaatgctgaacgcaacactggaaaatttcctgat
gttgttcttgctgtttcaagattaaagaagccttctgtaagatcatttgttctggactgt
gaaattgttgcttacgatcgggaaaaacagaaaatcttgcccttccagaccctcagtact
cgagctcgtaaaaatgtctctctcagtgacatcaaggttgatgtctgcatatatgctttt
gacattttgtatcgcaatggccaaccgcttcttcaggaacaactgagagttcgtagagag
catctttatgattcttttgaggaagagcctggattttttcagtttgcaacaactttaaca
tcaaatgatcttgatgaaatacaaaagtttcttgatgctgctgttgatgcaagttgtgag
ggtctaattatcaaaacaatggatcgagatgctacatatgagccttcaaagcgatcgctc
aactggctaaaattaaagaaagattacattgagagtattggagactcgctggatttagta
cctattgctgcatttcatggccgtgggaaacgtacaggtgtttatggtgcctttctgttg
gcatgttatgacagcaataatgaagaatttcaaagcatatgtaaaataggcactggattt
tctgaagcgatgcttgaagaacgttcttccagtctccgctctaaagttatacccaaacca
aggccgtactaccggtttgctgatactctcagtccagatgtatggttcgagccaacagag
gtttgggaggtgaaagctgcggacttgactattagccctgttcatcgtgctgccattggt
gttgtggatcctgataagggcatttctctccggtttcctcgcctaattcgtgttcgagaa
gacaagaccccagagcaggcttcatcatctgagcaggtggcagagatgtatactgctcaa
aaactcaatcatccaaacaatcaagatgacaatgaagatgattga

DBGET integrated database retrieval system