Celeribacter indicus: P73_2540
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Entry
P73_2540 CDS
T03575
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cid
Celeribacter indicus
Pathway
cid03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P73_2540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cid03400
]
P73_2540
Enzymes [BR:
cid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P73_2540
DNA repair and recombination proteins [BR:
cid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P73_2540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
AAA_16
SecA_DEAD
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AJE47255
UniProt:
A0A0B5E1I2
LinkDB
All DBs
Position
2534361..2537831
Genome browser
AA seq
1156 aa
AA seq
DB search
MTEHIKIGGAPEGFDAFLLAREVARAAGPVVHVARDDKRLAALREALRFFAPDLPVIDFP
AWDCLPYDRISPHADISAARMATLAALVHGALPKRFVLLTTLSAAMQRVPARETLAEAAF
GLRKGQRVNERQLRDFFVRMGFTQAPTVVEHGDYAIRGGIIDVFPPGHELPVRLDFFGDE
LDGLRRFDPGSQKTVDSLTEITFTPVSEVILDEAAITRFRQNYRIEFGAAGSDDPLYEAV
SAGKKHAGIEHWLPYFHDRLETLFDYLPESVISLDDQSTAARLSRWEGIVDQYETRRIAL
TQKGRLDSVYKPCPPGLLYLDDAAWEAAVAGRRVLHFHPLAQATGPGVIDAGGRIGRNFA
PERQMEGINLFEELADHVEKRRKQGQVVIASWSEGARERLKSLLEDQDLSGLNEIGDWRD
VPEGTGGVYLSVWALEQGFEAPVGGGHSVTVISEQDVLGDRLVRRPGRRKRAEYFLTEYS
TLTPGDLIVHVDHGVGIFRGLEVVTAAGAAHECLLLEYAGGDRLYLPVENIELLSRYGHE
EGLLDKLGGGAWQAKKARMKERVREVAEKLMRIAAERHIRKAPIMEPPADMWEAFCARFP
YSETEDQLRAIEDVLDDLEAGRPMDRLICGDVGFGKTEVAMRAAFVAAMSGAQVAVIAPT
TLLARQHFRSFADRFRGFPLNVRPMSRFVSARDMAKTREELADGTVDIVVGTHALLAKSV
KFANLGLLIVDEEQRFGVTHKEQLKSLRSNIHVLTLSATPIPRTLQMSLTGVRDLSIIGT
PPVDRLSIRTYVSEFDTVTIREALLREHYRGGQSFFVVPRVSDIPEIEEFLRDQVPEVSV
VVAHGQMAAGELDERMNAFYDGKYDVLLATTIIESGIDIPTANTMVVHRADMYGLAQLYQ
IRGRVGRSKSRAYCYLTTKPRAPLTPQAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNL
VGEEQSGHVREVGFELYQSMLEDAIARIRSGEEQVSLEDGQWAPQINLGVPVLIPEEYVP
DLDVRLGLYRRLSGLKTKVELEGFAAELIDRFGKLPKEVNTLLLVVRIKEKCREAGIARL
DGGPKGATIQFHNDKYANPAGLVEFIHGQKGQAKVKDNKIVIRRDWSRDADKIKGAFSIA
QDLAKFAKAAPQKAKG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
gtgacggaacatatcaagatcgggggagcgcccgaggggttcgacgcctttcttcttgcg
cgcgaggtggcgcgggcggcgggtccggtcgtccatgtcgcgcgcgacgacaagcggctc
gcggcgctgcgcgaggcgttgcgcttcttcgcgccggacctgccggtgatcgacttcccg
gcctgggactgcctgccctatgaccggatttcgccccatgccgatatctccgcggcgcgg
atggcgacgctcgcggcgctcgtccatggcgcgctgccgaaacgcttcgtcctgctcacg
acgctttcggcggcgatgcagcgcgttcccgcgcgggagacgctggcggaggccgccttc
gggctgcgcaaggggcagcgggtcaacgagcggcagctgcgggacttcttcgtgcgcatg
ggcttcacccaggcgccgacggtggtcgagcacggggactatgcgatcaggggcggcatc
atcgacgtgtttccgccggggcatgaattgccggtgaggctcgatttcttcggcgatgaa
ctcgacggcctgcgccgtttcgatccgggcagccagaagacggtggacagccttacggag
atcaccttcaccccggtgtcggaggtgatcctcgacgaggctgcgatcacgcgcttccgg
cagaattaccgcatcgaattcggggccgcgggcagcgacgatccactctacgaggcggtc
tccgccggcaagaagcacgccgggatcgagcattggctaccctatttccacgaccgcctg
gaaaccctgttcgactacctgccggaatccgtgatttcccttgacgatcaatcgactgcc
gcgcgtctttcgcgctgggaaggcatcgtcgaccaatatgagacgcggcgtatcgcgctc
acccagaagggccggctcgacagcgtctacaagccctgtccgccgggacttctctacctc
gacgacgcggcctgggaggcggcggtggccgggcggcgcgtgctgcatttccacccgctc
gcgcaggccacggggccgggcgtcatcgacgccggcgggcggatcgggcgcaatttcgcg
cccgagcgccagatggagggcatcaatcttttcgaggagctggcggatcacgtcgaaaaa
cggcgcaagcaggggcaggtggtgatcgcctcctggtccgagggcgcgcgcgaacggctg
aaatcgctgctcgaggatcaggatctgagcgggctgaacgagatcggggactggcgcgac
gtgccggaaggcacgggcggcgtctacctgtcggtctgggcgctcgaacaggggttcgag
gcgccggtgggcggcggccattcggtcacggtgatctccgaacaggacgtgctgggcgac
cggctggtgcgccgtccggggcgccgcaagcgggcggagtacttcctcaccgaatattcc
acgctcacccccggcgatctgatcgtccatgtcgatcacggcgtcggcatctttcgcggg
ctggaggtggtcacggcggcgggcgcggcgcatgaatgcctcctgctcgaatatgcgggc
ggcgaccggctttacctgccggtcgagaacatcgagcttctgagccgctacggccatgag
gaggggcttctcgacaagctcggcggcggcgcctggcaggccaagaaggcgcggatgaag
gaacgtgtccgcgaggtggccgagaagctcatgcgcatcgccgccgaacggcatatccgc
aaggcgccgatcatggagccgcccgccgacatgtgggaggccttctgcgcgcgcttcccc
tacagcgagaccgaggatcagcttcgcgcgatcgaggacgtgctcgacgacctcgaggcc
ggccggccgatggaccggctgatctgcggcgacgtgggtttcggcaagaccgaggtggcg
atgcgcgcggctttcgtcgcggcgatgtcgggcgcgcaggtggcggtgatcgcgccgacg
acgctgctcgcgcggcagcatttccgctccttcgccgaccggttccgcggctttcccctc
aacgtccggccgatgtcccgcttcgtctccgcgcgcgacatggcgaagacgcgcgaggaa
ctggccgacgggacggtggatatcgtcgtgggcacccatgcgcttctggcgaaatcggtg
aaattcgccaatctcggcctgctgatcgtggacgaggaacagcgcttcggcgtgacccac
aaggaacagctcaaatcgctgcgctccaatatccacgtgctcacgctctcggcaacgccg
atcccgcgcacgctccagatgtcgctcaccggggtgcgcgacctgtcgatcatcggcacg
ccgcccgtggaccggctgtcgatccgcacctatgtgagcgagttcgacacggtgacgatc
cgcgaggcgctcttgcgcgaacattatcgcggcgggcagagtttctttgtcgtgccgcgc
gtctccgacattcccgagatcgaggagttcctgcgcgatcaggtgcccgaggtctccgtc
gtcgtcgcccatggccagatggcggcgggcgagctcgacgagcggatgaatgccttctac
gacggcaagtatgacgtgcttctggccacgacgatcatcgagagcggcatcgacattccg
accgcgaacacgatggtcgtgcaccgcgccgacatgtacggtctcgcacagctctaccag
atccgcggccgggtcggccggtcgaaatcgcgcgcctattgctacctcacgacgaaaccc
cgcgcaccgctcacgccgcaggcggagaaacggctgcgcgtgctgggctcgctcgacacg
ctcggcgcgggtttcaccctcgcaagccaggatctcgacattcgcggggcgggcaatctc
gtgggcgaggagcagtccggccatgtgcgcgaggtggggttcgagctttaccagtcgatg
ctcgaggacgcgatcgcgcggatccgctcgggcgaggaacaggtgagcctcgaggacggg
caatgggcgccgcagatcaatctcggcgtgccggtgctgatccccgaggagtacgttccc
gatctcgacgtgcggctcgggctttatcgccggctttcggggctgaagacgaaggtggag
ctcgaaggcttcgccgccgagctgatcgaccgtttcggcaagttgccgaaggaggtcaac
accctgctgctcgtcgtgcggatcaaggagaaatgccgcgaggccgggattgcgcggctt
gacggcgggccgaagggcgcgacgatccagttccacaacgacaaatacgccaatcccgcg
gggctcgtggagttcatccacggccagaagggtcaggcgaaggtgaaggacaacaagatc
gtcatccgccgcgactggagccgcgatgccgacaagatcaagggcgccttttccatcgcg
caggatctggcgaagttcgcgaaggccgccccgcagaaggcgaagggctga
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