Chryseobacterium sp. IHB B 17019: ATE47_09765
Entry
ATE47_09765 CDS
T04193
Definition
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cih
Chryseobacterium sp. IHB B 17019
Pathway
cih03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ATE47_09765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cih03400
]
ATE47_09765
Enzymes [BR:
cih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ATE47_09765
DNA repair and recombination proteins [BR:
cih03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ATE47_09765
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Trypan_glycop
RPA_C
DNA_ligase_C
RNA_pol_N
Other DBs
NCBI-ProteinID:
ALR32551
LinkDB
Position
complement(2112424..2114472)
AA seq
682 aa
MAHDKTSQNEISSLLKKAKKAAWPADISPMLATLVDEPFSDPDWVYEVKWDGYRTIAYID
NGKVDLRSRNNKIFTDKYYSITEIFKNWNIKAVIDGEITVINKNGVSDFASLQNWRSETD
GELIFYAFDLLWYDGKDLTQLPLLERHAILNHIFSQNNDDRIRISTIFNTDGIEFFEAAQ
KLGLEGIMAKKANGTYDIGARSKDWLKIKTDKRQEVVIGGFTNNEGSSKIFSSLLLGVYQ
GKEFHYVGKVGTGFSSKKQKEMMEEFKPLITKKNPFNTEPDINKPSRFRPNPPKATATWL
KPELVCEVSYAEITDDGVFRHPSFKGMRSDKKAKEVHLEVEKNTENIIADTGNTQSEEKK
DHIVKASENKSVKTLLNPTEKTQVKKVKGHELKFTNLDKIFWPDEKLRKRDLINYYFQVA
PYILPYLKDRPQSMNRFPNGINGKSFYFKDVTGKAPDWVKTFLYHSETDDRDRHYLVGDD
EATLLYMANLGCIEMNPWSSTIQKPDHPSFCIIDLDPDKNSFDQVIEAAQVTKQILDDLG
IPSYCKTSGSTGLHIYIPLGNKYTYEQSKEFARVIVTLVHNELSEFTSIERAIKDRKGKM
YLDFLQNRPHATIAAAYSVRPKPGATVSMPLHWDEVKKGLKMSDFTILNAVERLESEGDI
FQPVLGKGIDLVNVIKKFSEGF
NT seq
2049 nt
+upstream
nt +downstream
nt
gtggctcatgacaaaacatcgcaaaacgagatcagctcacttttaaaaaaagcgaaaaag
gcagcctggccggcagatatctccccaatgctggcaactcttgtggacgagccgttcagt
gatccggattgggtttatgaagtaaaatgggatggttacagaaccatcgcatatattgat
aacggtaaggtagacctgagatcgcggaacaataaaatattcacagacaaatactattca
ataacagaaattttcaaaaactggaatataaaagcggttattgacggggaaattacagtc
atcaataaaaacggtgtttccgattttgcaagccttcaaaactggcggagcgaaacagac
ggagagctgatattttacgcattcgacctgctttggtacgatggtaaagaccttacacag
ttgccgctattggaaagacatgccatccttaatcatattttcagccagaataatgatgac
agaatcagaatcagcacgatatttaataccgatggaatagagttttttgaagccgctcaa
aagctggggctggaaggtattatggcaaagaaagccaatggtacgtatgatattggcgct
cggtccaaagactggcttaaaattaaaactgataaaagacaggaagttgtaatcggtggt
ttcacgaataatgaaggctcttcaaaaattttcagttctttgctgttaggagtgtatcag
gggaaagaatttcattacgtaggaaaagtggggacaggtttttcctcaaaaaaacaaaaa
gaaatgatggaagaatttaagcctttgattacgaaaaaaaatccttttaatacagaaccg
gacattaataaaccttcccgcttccgccccaatcctccgaaagctacggcaacctggctc
aaaccagagcttgtatgtgaagtaagctatgccgagatcactgacgacggagtttttcgt
catccttcatttaaaggaatgagatctgataaaaaagccaaagaagtacatctggaagta
gaaaaaaatacggaaaacatcattgcagataccggaaatactcaatctgaagaaaaaaaa
gaccatattgtaaaagcttcagaaaataaaagtgtaaaaactttgcttaatccaactgaa
aaaacacaggtaaaaaaagtaaaaggccacgagctgaagttcaccaatctcgataaaatt
ttctggccggatgagaaattaaggaaaagagatctcatcaattattattttcaggttgca
ccttatattcttccataccttaaagaccgtccgcaaagcatgaaccgtttcccaaatggg
atcaacgggaaaagcttttattttaaagatgtcacaggcaaagccccggattgggtgaaa
acctttttataccacagtgaaactgatgaccgcgaccgtcattacctcgtgggagacgat
gaagcgaccttgttatatatggctaatcttggatgtatcgagatgaatccatggagtagt
accatacaaaagccggatcatccttcattctgtatcatcgaccttgatccggataagaat
tcttttgatcaggttatagaagcggcgcaggtcaccaaacagattttggatgatttggga
attccttcttattgtaaaaccagcggctcgaccgggctgcatatctatattccgttggga
aataaatatacttatgagcagtccaaagagtttgcccgggtgattgtaaccttggttcac
aatgagttatcagaatttacaagtatcgaacgtgccatcaaagaccgaaaaggtaaaatg
tatcttgattttttacaaaacaggccccacgcgacaattgctgcagcgtattctgtacgt
ccaaagcccggcgcgacagtctctatgccgctgcattgggatgaggtaaagaaaggtttg
aagatgagcgatttcacgattttaaatgctgttgaacgtttggaaagcgaaggtgatatt
tttcaaccagttttaggaaaaggaattgatcttgtcaatgttattaaaaaattttctgaa
ggattttaa
DBGET
integrated database retrieval system
