KEGG   Chryseobacterium sp. IHB B 17019: ATE47_09765Help
Entry
ATE47_09765       CDS       T04193                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cih  Chryseobacterium sp. IHB B 17019
Pathway
cih03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cih00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ATE47_09765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cih03400]
    ATE47_09765
Enzymes [BR:cih01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ATE47_09765
DNA repair and recombination proteins [BR:cih03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ATE47_09765
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2 Trypan_glycop RPA_C RNA_pol_N
Motif
Other DBs
NCBI-ProteinID: ALR32551
UniProt: A0A0S3FXY0
LinkDB All DBs
Position
complement(2112424..2114472)
Genome map
AA seq 682 aa AA seqDB search
MAHDKTSQNEISSLLKKAKKAAWPADISPMLATLVDEPFSDPDWVYEVKWDGYRTIAYID
NGKVDLRSRNNKIFTDKYYSITEIFKNWNIKAVIDGEITVINKNGVSDFASLQNWRSETD
GELIFYAFDLLWYDGKDLTQLPLLERHAILNHIFSQNNDDRIRISTIFNTDGIEFFEAAQ
KLGLEGIMAKKANGTYDIGARSKDWLKIKTDKRQEVVIGGFTNNEGSSKIFSSLLLGVYQ
GKEFHYVGKVGTGFSSKKQKEMMEEFKPLITKKNPFNTEPDINKPSRFRPNPPKATATWL
KPELVCEVSYAEITDDGVFRHPSFKGMRSDKKAKEVHLEVEKNTENIIADTGNTQSEEKK
DHIVKASENKSVKTLLNPTEKTQVKKVKGHELKFTNLDKIFWPDEKLRKRDLINYYFQVA
PYILPYLKDRPQSMNRFPNGINGKSFYFKDVTGKAPDWVKTFLYHSETDDRDRHYLVGDD
EATLLYMANLGCIEMNPWSSTIQKPDHPSFCIIDLDPDKNSFDQVIEAAQVTKQILDDLG
IPSYCKTSGSTGLHIYIPLGNKYTYEQSKEFARVIVTLVHNELSEFTSIERAIKDRKGKM
YLDFLQNRPHATIAAAYSVRPKPGATVSMPLHWDEVKKGLKMSDFTILNAVERLESEGDI
FQPVLGKGIDLVNVIKKFSEGF
NT seq 2049 nt NT seq  +upstreamnt  +downstreamnt
gtggctcatgacaaaacatcgcaaaacgagatcagctcacttttaaaaaaagcgaaaaag
gcagcctggccggcagatatctccccaatgctggcaactcttgtggacgagccgttcagt
gatccggattgggtttatgaagtaaaatgggatggttacagaaccatcgcatatattgat
aacggtaaggtagacctgagatcgcggaacaataaaatattcacagacaaatactattca
ataacagaaattttcaaaaactggaatataaaagcggttattgacggggaaattacagtc
atcaataaaaacggtgtttccgattttgcaagccttcaaaactggcggagcgaaacagac
ggagagctgatattttacgcattcgacctgctttggtacgatggtaaagaccttacacag
ttgccgctattggaaagacatgccatccttaatcatattttcagccagaataatgatgac
agaatcagaatcagcacgatatttaataccgatggaatagagttttttgaagccgctcaa
aagctggggctggaaggtattatggcaaagaaagccaatggtacgtatgatattggcgct
cggtccaaagactggcttaaaattaaaactgataaaagacaggaagttgtaatcggtggt
ttcacgaataatgaaggctcttcaaaaattttcagttctttgctgttaggagtgtatcag
gggaaagaatttcattacgtaggaaaagtggggacaggtttttcctcaaaaaaacaaaaa
gaaatgatggaagaatttaagcctttgattacgaaaaaaaatccttttaatacagaaccg
gacattaataaaccttcccgcttccgccccaatcctccgaaagctacggcaacctggctc
aaaccagagcttgtatgtgaagtaagctatgccgagatcactgacgacggagtttttcgt
catccttcatttaaaggaatgagatctgataaaaaagccaaagaagtacatctggaagta
gaaaaaaatacggaaaacatcattgcagataccggaaatactcaatctgaagaaaaaaaa
gaccatattgtaaaagcttcagaaaataaaagtgtaaaaactttgcttaatccaactgaa
aaaacacaggtaaaaaaagtaaaaggccacgagctgaagttcaccaatctcgataaaatt
ttctggccggatgagaaattaaggaaaagagatctcatcaattattattttcaggttgca
ccttatattcttccataccttaaagaccgtccgcaaagcatgaaccgtttcccaaatggg
atcaacgggaaaagcttttattttaaagatgtcacaggcaaagccccggattgggtgaaa
acctttttataccacagtgaaactgatgaccgcgaccgtcattacctcgtgggagacgat
gaagcgaccttgttatatatggctaatcttggatgtatcgagatgaatccatggagtagt
accatacaaaagccggatcatccttcattctgtatcatcgaccttgatccggataagaat
tcttttgatcaggttatagaagcggcgcaggtcaccaaacagattttggatgatttggga
attccttcttattgtaaaaccagcggctcgaccgggctgcatatctatattccgttggga
aataaatatacttatgagcagtccaaagagtttgcccgggtgattgtaaccttggttcac
aatgagttatcagaatttacaagtatcgaacgtgccatcaaagaccgaaaaggtaaaatg
tatcttgattttttacaaaacaggccccacgcgacaattgctgcagcgtattctgtacgt
ccaaagcccggcgcgacagtctctatgccgctgcattgggatgaggtaaagaaaggtttg
aagatgagcgatttcacgattttaaatgctgttgaacgtttggaaagcgaaggtgatatt
tttcaaccagttttaggaaaaggaattgatcttgtcaatgttattaaaaaattttctgaa
ggattttaa

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