KEGG   Coccidioides immitis: CIMG_00793Help
Entry
CIMG_00793        CDS       T01114                                 

Definition
(RefSeq) DNA ligase I, ATP-dependent (dnl1)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cim  Coccidioides immitis
Pathway
cim03030  DNA replication
cim03410  Base excision repair
cim03420  Nucleotide excision repair
cim03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cim00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    CIMG_00793
   03410 Base excision repair
    CIMG_00793
   03420 Nucleotide excision repair
    CIMG_00793
   03430 Mismatch repair
    CIMG_00793
Enzymes [BR:cim01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CIMG_00793
    6.5.1.6  DNA ligase (ATP or NAD+)
     CIMG_00793
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CIMG_00793
DNA replication proteins [BR:cim03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CIMG_00793
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CIMG_00793
DNA repair and recombination proteins [BR:cim03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CIMG_00793
   NER (nucleotide excision repair)
    Other NER factors
     CIMG_00793
   MMR (mismatch exicision repair)
    Other MMR factors
     CIMG_00793
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DUF3246
Motif
Other DBs
NCBI-GeneID: 4566392
NCBI-ProteinID: XP_001247022
UniProt: J3KHR9
LinkDB All DBs
AA seq 969 aa AA seqDB search
MRLSRFCLTRSKTTLAPLIYRQPTSIRFSCSVSSYFVIQRRGYSLITTNMAQKSGRKQTT
LGKFFGGNAASLPEAKTQSTLSFSSEAGSAKSETKPAKDLQDNEDDDVDMEDSSRDIPTK
TGPVTPTKNGTVCSRPASPGAPRVDSDEEIKSESARSESASPSARKLKRQKDSVVEESDG
NESEPVTKRRRGPTKPKTESSTSKPAAGRKNTKASPRGKTNDKGATSTPNKQLENNESAV
GNAESSESDQDDLLSESSSEELDIKPEKEEKKKNTASKQRQKVQATLKSSANDPYPDWKA
GDPVPYAALCTTFSLVEMTTKRLAILAHCSLFLRQVLRLTPEDLLPTVQLMINKLAADYA
GIELGIGESLIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRG
VHESLLAIAKMQGHGSQEKKVGGIKKLLSSADSATAGKGSKGIDITKNKGGPSEAKYIVR
FLEGKLRLGLADKTVLVALAHAMVAHETLSKGNKTPSAEQLAKGEAILKQVYSELPSYEV
IIPAMLEHGIFNLQENCKLQPGVPLKPMLAKPTKSISEVLDRFEGKDFTCEYKYDGERAQ
IHYVSQDAIKDYTATAGTLQKDGKGLCAIFSRNSEDLSKKYPDVLDKLESWVQPGTKSFV
LDCETVAWDLENKKVLPFQQLMTRKRKDVKAEDIKVRVCIFAFDILFLNGAPTVKMTFRE
RRALLHETFVPTEGEFAFAQYGNTSNVEEIQTLLDESVKSSCEGLMVKMLDTEESGYEPS
KRSRNWLKVKKDYLAGIGDSLDLVVIGAYFGKGKRTSVYGAFLLAAYNPSTENYETICNI
GTGFSDALLDELHKSLSPLAISQPKPFYSHSSVPKDQPDVWFEPRLVWEVKAADLTISPR
YRCASDEVMGMAGADGKGVSLRFPRYIKARDDKKPDQASTTRMVAEMYRKQESVTKEDKG
KGVDDDWEY
NT seq 2910 nt NT seq  +upstreamnt  +downstreamnt
atgcggttgtcgcgtttttgtctgacgcggagcaagacaaccttagcgcccttaatttac
agacaacccacgtcgatccggttctcttgctcagtatcctcatactttgttatccaacgc
aggggatatagcttgatcacaacaaatatggcgcagaagagcgggagaaagcagactact
ttagggaagttctttggcggaaacgcagcctcgctccccgaagcaaaaacccagtctaca
ctctctttttcatctgaagctggaagcgcgaaatctgagacaaaaccggccaaagatctc
caagataatgaagacgatgatgttgatatggaagattcaagtcgcgatattcctactaag
actggtcccgtaacgccaacgaaaaacggaaccgtttgttcaaggccagcttctcctggg
gctcccagagtagattcagatgaagaaattaaatccgagagtgcgaggagtgaaagcgcg
tcgccaagcgcaagaaagcttaagcgacagaaggattcagtggttgaagagagtgatgga
aatgagagcgaacctgtcaccaaaaggcgaagagggccaacgaaaccgaaaacagagagc
tctacatcgaagcctgccgctggaagaaaaaacacaaaggcctcgccaaggggtaaaacc
aatgataaaggcgctaccagcacacccaacaagcaactggagaataatgaatcagcagtc
ggaaatgcagagtcctcagaatctgaccaggacgatctattgtcagaaagtagctcagag
gagctggatatcaaacctgaaaaagaggaaaagaagaaaaacaccgcatcaaaacaaaga
cagaaggttcaggcaaccttgaaaagcagcgcaaatgatccatatccagattggaaagct
ggtgaccctgttccctatgccgccttgtgcactacattttccctcgttgaaatgaccacc
aaaagattggctattctagcccattgctctctatttcttcgtcaagtcttacgattgact
cctgaggatttacttccaacagtccagcttatgatcaataagctagctgcggattacgcc
ggtatcgagctcggaatcggcgagtccttgatcatgaaagccatcggcgaatccaccggg
cgtagtcttgccgtcatcaaagctgaccagcatgagatcggggatctgggccttgtcgcg
gccaagagtcgatcaaatcagcccactatgttcaaaccaaaaccattgaccgtgcgagga
gtccatgagagtctcttggcaattgctaagatgcaaggacacggatcccaggagaagaaa
gttggaggtattaaaaagctcctttcttcagctgattccgctacggctggaaagggctca
aaagggattgacatcacaaaaaataaaggcggtccgagtgaggccaagtatattgtccga
tttttagagggcaagctgcggctaggtcttgctgataaaaccgtcctcgtggctctagct
catgccatggtagcgcatgaaactttgtcaaagggcaacaagacacccagcgctgaacag
ctagcaaaaggagaagctattcttaagcaagtatatagcgaattaccatcttatgaagtg
attatccccgccatgctagagcatggaatatttaaccttcaggagaattgcaagctgcag
ccgggggttccattaaagcccatgttagcaaaacccacaaaatccatttctgaagtcctc
gaccgctttgaaggaaaagactttacctgcgaatacaaatacgacggtgaaagagctcag
attcactacgtgtcacaagatgcaatcaaggattatactgccacagctggaaccttacaa
aaggatggcaaaggtctttgtgctatattttcccgtaactccgaggatctatctaagaag
tatccagatgttcttgataagctggaatcgtgggtccagccaggaaccaagagctttgtc
ctggactgcgagactgtcgcatgggatctcgagaacaagaaggtcttgccattccagcaa
ctcatgacacgcaagagaaaggacgtgaaagccgaagacataaaagtccgcgtttgcata
ttcgcgttcgatatcctgttcttgaatggagctcctactgtgaaaatgacattccgggaa
cggcgtgctcttttgcatgaaacatttgtcccaaccgaaggggagtttgctttcgcacaa
tatggaaacacgagtaatgtggaagagatccaaactctcttagacgagagtgtgaagtct
tcttgcgaaggtttgatggtaaagatgctagataccgaagaaagtggctatgaacctagt
aagcggagtcgcaattggctcaaggtcaaaaaggactatcttgctggtattggcgactcg
ctcgaccttgttgtcatcggcgcctactttggcaagggtaaacgtacttcggtctacgga
gcttttctcctcgctgcgtacaaccctagcactgaaaattacgagacaatatgcaatatc
ggtacaggcttctctgatgccctattggacgaacttcacaaatctctcagtcccctcgcc
atatcccaaccaaaaccgttctactcgcattcttccgtccccaaggaccagccagatgtc
tggttcgaacctcgcctagtatgggaggtcaaggcggcggacttaaccatcagtccccga
tataggtgtgcgagtgacgaagtgatggggatggcgggtgcggatggaaagggggtctcg
ctacggtttccaaggtatatcaaagcaagagatgataaaaagccagaccaggcgagcacg
actaggatggtagcggagatgtatcgaaagcaagagagtgtgacaaaagaggacaagggc
aagggagtggacgatgactgggagtactag

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