Coccidioides immitis: CIMG_08335
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Entry
CIMG_08335 CDS
T01114
Name
(RefSeq) pre-mRNA-splicing ATP-dependent RNA helicase PRP28
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
cim
Coccidioides immitis
Pathway
cim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CIMG_08335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cim03041
]
CIMG_08335
Enzymes [BR:
cim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIMG_08335
Spliceosome [BR:
cim03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CIMG_08335
Complex C
U5 SnRNP specific factors
CIMG_08335
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
DUF3334
PRAI
Motif
Other DBs
NCBI-GeneID:
4560364
NCBI-ProteinID:
XP_001241172
UniProt:
Q1DMX8
LinkDB
All DBs
AA seq
827 aa
AA seq
DB search
MYLSNSIMDGMLTEGTSAIPPPQPPLEPIERPPTPPPLPPDESALPPPPTDPAPPPPPPD
SLAPPPPPEDVPRSTYTVPVVVKKKKVGWGSSKSTTPLSVEELLRKKKEADEAASRPKFL
TKSQREKLALEKRAKEIEHERRIRAASTNGSMMSDSNGGGGNSNGRASPTTRYDNVNGSS
RTSIPTAPRALRGEIPTAPAAMRSSQAKNNDPRPGNKVPSDSAATGEKRTAPEDAQALLT
RQRYMGADQTSSFSAKKKRRRTTERKFNFEWNADEDTSPDYNPLYQNRSEMNFFGRGRLA
GFSDDVVDSAAKRYAKALEDRDLEAGSARAREILEMERRRREEGGRNGLDLHWSQKRLDQ
MRERDWRIFKEDFNISTKGGSIPNPMRSWGESGLPKRLLEIIDKVGYKDPSPIQRAAIPI
ALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRKSDGPYAIILAPTRELAQQ
IENEARKFCNPLGFNVVSIVGGHSLEEQSFSLRNGAEIIIATPGRLVDCIERRILVLSQC
CYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDTEEAEDARAMSQHLGGKDRYRQTMM
YTATMPSAVERIARKYLRRPAIVTIGNIGEAVDTVEQRVEFISGEDKRKKRLADILASGE
FRPPIIVFVNIKRNCDAVARDIKQMGYSSVTLHGSKTQEQREAALASVRNGNTDVLVATD
LAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQM
LMKSSISRVPEELRKHEAAQSKPTKAGGGQKRLDEGGMSAPKTGSGW
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgtacttaagcaatagcatcatggatggcatgttaactgagggcacctctgcgattcct
cctccacagccccctctggagcctattgaacgtccgccaacccctcctccattgcctcct
gacgaatccgcccttcctccgccaccaacggacccggctcctcctccacctccgccagat
tcccttgcaccgcccccgccgccggaagatgttcctaggtctacatatactgtaccggtg
gtggtaaagaagaagaaagtaggatggggaagctcaaagtcaactacacctttaagtgtc
gaggagctattaaggaagaagaaggaagcggatgaagcagcttcaaggcctaaatttctt
acaaaatcccaacgtgagaaacttgcactggagaaaagagcgaaagaaatcgagcatgag
agacgaataagagctgcaagtacgaacggcagtatgatgtcagattctaatggcgggggt
ggcaattcgaatggccgtgcttcgccgaccacccgatatgataatgtaaatggaagctcg
aggacctcaattcccactgcgccgcgtgcgctacgaggagaaatacccacggccccggct
gccatgcgtagctctcaggcgaagaataatgacccgcggccaggaaataaagtaccgtcc
gattcggctgccacaggcgagaaacgaacggcacctgaagatgctcaggccctgctcacc
agacagcgatatatgggcgccgaccaaacatctagcttctctgccaagaagaaaagaaga
cgtacaaccgaacgaaagttcaactttgaatggaatgcggatgaggacactagccctgat
tataacccgctgtaccagaatcggtctgagatgaacttctttggccgaggtcgattagct
gggttctctgacgatgtagtcgatagcgcggcgaagagatatgcgaaagctcttgaggat
agagacctggaggcaggtagcgcaagagcacgggaaattcttgaaatggaaagacgcagg
agagaagaaggtggccgaaacgggttggatttgcattggagccagaaacggctggatcag
atgcgtgaaagagattggagaattttcaaagaagacttcaatattagcacaaaaggaggc
agcattccgaatcctatgcgatcgtggggcgaatccggtttaccgaaacgtttgcttgag
atcattgataaggttgggtacaaagatccgtcacccatccagagagcagctatacctatt
gcattgcaaaatcgagaccttatcggagttgcggttactggttccggtaaaacggccgct
tttctgcttccgcttctcgtctacatcgccgagttaccgcgtctcgacgagttcgagtgg
aggaaaagcgatggaccttacgctatcatattggcccctacgcgtgaactggcgcaacaa
attgagaatgaagccaggaaattttgtaatccactaggattcaacgttgtcagtatcgtt
ggtgggcactccctagaagagcagtccttcagtctcaggaacggggctgaaatcatcatc
gctacccctggtcgtctggtggattgtatcgaacggcgtatccttgttctcagccagtgt
tgctacgtgatcatggacgaggctgatcgtatgattgatcttggttttgaggagcctgtc
aacaaaatccttgatgctcttccggtttcaaacgagaagccggatacagaagaagcagaa
gacgcgcgcgctatgagccagcatcttggaggcaaagatcgctacaggcagacaatgatg
tatactgcaaccatgccttccgccgtggaacgtatagcgagaaagtatcttcggaggccg
gcaattgtcaccattggtaatattggcgaagccgttgataccgtcgagcaacgagttgaa
ttcatctctggtgaggataaacggaagaaaagactggcagatatccttgcgtcaggcgaa
ttcagacctccaattattgtcttcgttaatattaaaagaaattgcgatgctgttgctcgt
gatattaaacagatgggatattcttcagttactctgcatggtagcaagacccaggaacaa
agagaagcagcgttggcgtccgttcgtaatgggaatacggacgtgcttgtcgctacagac
ctcgcaggacgtggtattgatgtgccagacgttagtttggtggttaacttcaacatggcg
acaaatattgagagttacacacatcgtatcggacgaactgggcgtgctggaaagagtggt
gtggcgatcacgttccttggaaacgaggatgcggatgtcatgtatgatcttaaacagatg
cttatgaagtcctcgatatcgcgagttccggaggagctccgcaagcatgaggcggctcag
tccaagcctaccaaggctggcggtggacagaagaggcttgacgagggcggcatgtctgcg
cccaagactggttctgggtggtag
DBGET
integrated database retrieval system
