Ciona intestinalis (yellow sea squirt): 100178764
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Entry
100178764 CDS
T01056
Name
(RefSeq) thrombospondin-DD
Organism
cin
Ciona intestinalis (yellow sea squirt)
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Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
F5_F8_type_C
EGF_CA
cEGF
EGF_3
Ephrin_rec_like
EGF
KCNQC3-Ank-G_bd
Motif
Other DBs
NCBI-GeneID:
100178764
NCBI-ProteinID:
NP_001265897
Ensembl:
ENSCING00000009058
UniProt:
E0XJK1
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Position
3:4555145..4580030
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AA seq
992 aa
AA seq
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MRIAAISTQGAPEFNFFITKYMLSYSSDGITWVNYVPDQPFLSNDTTSTTSSTQYGTTVT
TPYSNTSNYTAQPTTPSPFPFLPITMAMVSSVNSTVINDSILLPGNNDSNSIAKNMLSPE
ILARYVRLLPAGWVGGIGLRMEMYGCNEEIRLRENSKCYRCPSSYYCPGDGRKLPCGRCA
DFATVGSHNIDSLNSVYNETCGRSPTEFSFGAKAECSTCLKGYVCSNGLATSCPTLTYTA
GCNDTMCSPCTVCEPGHSCTSGTKKPCEPGSYSNANTPGVCIDCKAGTYSDTHGSTSCKT
CTSGSQSCIGASFCQPCIAQEWSPDGADRCQGCHKDCPCLSSPCFRSVQCVNIRHASNQT
WSFKCYDCPKGFTGDGETCSDIDECMLSNPCVDQTQCVNTYGGFYCNGCPSGYHSDPYFG
FGLEDTKTIQICNDINECDESGTCDPLVQCNNTMGNYTCGQCLLGFTGTGYTKCHEPDAC
IPISVRRGCDIIASCDPVSNHNAVCECPPGFAGPGSACGVDNDSDGQPDLFIPCGDYVAC
AEDNCIGIPNSGQEDADGDRRGDDCDQDDDNDFIPDHLDNCPLVPNYNPTGNQVDSDGDG
YGDACDTCPYLFGQFADTDGDGLGDGCDTDSDNDGEADTTDLCPLDKNVTTSPDKDNDGV
GDPCDNCVFRSNSGQSDKNQNRVGDACDDGKDADGDSVLTFLDNCPYVPNPSQSDWDGDG
VGDACDDDADNDGKPDDVDHCPFTVDTNVEDDSPCKDDYDGDGILDVDDTCIADPTISST
TLLPYMEVNLHTGSPLPQWKVTHKGKSVSQPNSTPFPAMLIGDQRYGSMDYTGSFFVNEN
PSAGNYVGFVFCYQNNKHFYVVMWMNEHNSEDQNARKTGLKGLQIKVVDSNTGPHINLAD
AIWHTSDTTNQVDLIYHEPTLIGWEAKTPYLFTIQHRPSVGSIHVVITHLDKLIVDTGPV
YDTKYTGGRVGILSFRQPNVIWSQLKVKCTKR
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgagaatcgcagccatttcaacacagggagctccagagtttaactttttcattacaaag
tatatgttaagctacagtagtgacggcattacttgggttaattacgtaccagatcaaccc
ttcctatcaaatgacaccacaagcacaacaagttctacgcaatatggaaccacagtaaca
acaccttactccaacacaagcaactacactgcccagccaaccaccccttccccattccca
tttctcccaattacaatggctatggtttcttcagtaaacagcactgttataaatgatagc
atcctgttacctggaaacaatgattccaacagcatagcaaagaacatgctaagtcctgaa
atactggcaagatatgtgaggttattaccagcaggttgggttggtggaattggactcaga
atggagatgtatggatgtaatgaagagataagactgagagaaaacagcaaatgttacaga
tgtccatcgtcatactactgtcctggggatggtaggaagctaccttgtggtcggtgtgct
gactttgcaacagttggatctcacaacatagattcattgaattctgtttataacgaaact
tgtggacgttctcctactgagttttcatttggagcaaaagcagaatgttcaacatgcttg
aagggatatgtttgcagcaatggcttagcaacctcatgccccactttaacatacactgct
ggttgcaatgacaccatgtgctctccgtgcactgtgtgcgaacctgggcactcatgcaca
agtggcacgaaaaaaccttgtgagcccggttcctattcaaatgcaaatacaccaggtgtt
tgtattgactgtaaagcaggcacatatagtgacactcatggttctacatcatgcaagaca
tgcacttcaggctcccaaagttgtattggagcaagtttttgtcagccatgcattgcacaa
gagtggtcaccagatggggctgataggtgccagggatgccataaagattgtccatgcctc
agttcaccgtgcttccgcagtgtacagtgtgttaatataagacatgcttcaaaccagaca
tggagtttcaaatgttacgattgccccaaaggcttcactggagatggagagacatgcagt
gacattgatgagtgcatgctttcaaatccatgtgtggaccaaacacaatgcgtgaacaca
tatggaggcttctactgcaatggctgcccatctggttaccatagcgacccttactttggg
tttggacttgaggacaccaagacaatccagatatgcaatgatataaatgaatgtgatgaa
tcagggacttgtgatccgttggtgcagtgcaacaacactatgggcaattacacatgtggg
cagtgtctccttggattcacagggaccgggtacaccaagtgtcatgaacctgatgcatgt
attccaatcagtgtgagaaggggttgtgatattattgcttcatgtgacccggtcagcaac
cataatgctgtttgtgagtgtccgcctgggttcgccgggcccggcagtgcatgtggggtc
gacaacgattccgacgggcaacctgatctgttcattccctgtggtgattatgttgcatgc
gcggaggataattgtatcgggatccctaacagtggtcaggaggacgcagatggagacagg
aggggagatgattgtgatcaagatgatgataatgatttcatcccggatcatttggataac
tgtccacttgtccccaattacaatccaactggaaaccaagtggattccgatggtgatggg
tacggtgacgcatgcgatacttgtccctatctgttcgggcaattcgctgacacagatgga
gatggcttgggtgacggttgtgacactgactctgacaacgatggcgaagcagacactact
gatctttgccctctggataagaacgttactacctcaccagataaagataatgatggagtg
ggtgatccgtgcgataactgcgtttttagatccaattccgggcaatctgataaaaaccag
aaccgtgttggggacgcttgcgatgacgggaaagatgctgacggtgacagtgtccttaca
ttccttgacaactgcccttatgttcccaacccctcacaatcggactgggatggggacgga
gtgggtgacgcatgcgatgatgatgcagacaacgatgggaaacctgatgatgttgatcat
tgtccgttcactgtggataccaatgttgaagatgattccccatgcaaagatgactatgat
ggagacgggattttggatgtggatgatacttgcatcgctgatcctacgatctcatcaacc
actctacttccttatatggaagttaatcttcacactggttcaccacttccacaatggaaa
gtcacacacaagggtaagtcggtgtcccaaccaaactcaactccttttcctgcaatgctg
attggtgatcagcgttacggttcaatggattacactgggagctttttcgtcaatgaaaac
ccaagtgcgggaaactatgttgggtttgtgttttgttaccaaaacaacaaacatttttat
gtcgtaatgtggatgaatgaacacaacagcgaagatcaaaatgcgagaaaaactggactc
aagggattacagataaaggttgtagattctaacacaggcccccacattaaccttgctgac
gcaatatggcatacatcggatacaactaaccaggttgacctcatataccatgaacctaca
ttgataggttgggaagctaaaactccttatctcttcactattcagcacagaccatcagtt
ggtagcatccatgttgtgataacccaccttgacaagctaatagttgacacaggacctgtg
tatgatacaaagtataccggtggccgagttgggattctatcatttcgtcaacccaatgtt
atttggtcccaacttaaagtgaaatgcactaaacggtga
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