KEGG   Ciona intestinalis (yellow sea squirt): 100183681
Entry
100183681         CDS       T01056                                 
Name
(RefSeq) aprataxin and PNK-like factor
  KO
K13295  aprataxin and PNK-like factor [EC:3.1.-.-]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cin03400]
    100183681
DNA repair and recombination proteins [BR:cin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     100183681
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     100183681
SSDB
Motif
Pfam: zf-CCHH FHA Yop-YscD_cpl FHA_2
Other DBs
NCBI-GeneID: 100183681
NCBI-ProteinID: XP_002121818
Ensembl: ENSCING00000004339
LinkDB
Position
2:complement(6401088..6403794)
AA seq 485 aa
MATNCSIQRQDVDESGELRINEGNTTLGRGGFLKVDDKKVSRTHAVLELKENKLVISSTH
ANPCFVFLKASGKKLLLKKGGSVRLTTGDEFSLLQNKYKYKVSLQDDSNNSSNKDVASAS
EETKLCQINEGENSLHVKPKIFNKSQKLFPKTNNQPPNTEETPKVSKKRKLPSWMNNNNK
VLKTDEQNSSGDLKTEQNLSQCNENVSDDDIFSEQEPTSHYNAKESVKHEKENELDDVES
NSSDANGILNDSHFSDAKSTADDESDLTPDRISEPDDTECRPVNQKSPIRQNSLINQILP
IHRNSHVNQTSLANQNLPANQNSSVSQIPPVNQTSPANQNSLVNQTPSTSRREPCVFGRS
CYRKNPNHFSELSHPGDSDYESPPGSDEDEDKPECEYGLDCYRRNPLHRKQFKHTKRKVP
KRQTALKPHNGDSDDEYDDSFVDDSEEEIIDEDSDWDPSVDKKKKQKVESESDEELEDDI
IMDSD
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcaacaaattgttcaattcaaagacaagatgtagacgaaagtggcgagctacgaatt
aatgaaggaaatacaacgcttggtagaggtggcttccttaaagtagatgataagaaagtc
tcaagaacacacgctgtgttggaattaaaagaaaacaaactggttataagttccactcat
gctaatccttgttttgtgtttttgaaagcatcagggaaaaaacttttgctaaaaaagggt
ggttcagttaggttaacaactggggatgaattttcattgttgcaaaacaagtataaatac
aaagtatccctacaggatgattcaaataacagcagtaacaaagatgttgctagtgctagt
gaagaaacaaaattatgccaaataaatgaaggagaaaattctttacatgtgaaaccaaaa
atatttaataaaagtcaaaagttgtttcctaagactaacaatcagccgcctaacactgaa
gaaactcctaaagtttccaagaaaaggaaactgccttcatggatgaataataacaacaaa
gttttgaaaactgatgaacaaaatagcagcggtgatttaaaaactgaacaaaatttatca
cagtgcaatgaaaatgtaagtgatgatgatatatttagtgaacaggaacctacaagccat
tataatgcaaaggaatctgtgaaacatgagaaagaaaacgaattggatgatgttgaaagc
aattccagtgatgccaacggtattttaaatgatagccacttcagtgatgctaaatcaact
gcagatgatgaatcagatttaacccctgatcgcatttcagaacctgatgacactgaatgt
cgacctgtcaatcaaaaatcacctatcagacaaaattcacttatcaatcaaattttacct
atccatcgaaattcacatgtcaaccaaacttcacttgccaatcaaaacttacctgccaat
caaaactcatcggtcagtcaaatcccacctgtcaatcaaacttcacctgccaatcaaaac
tcactcgtcaatcaaacaccatcaacatcaagaagagaaccttgtgtgtttggccgatct
tgctatcgaaaaaatccgaaccatttctctgagttaagtcatccgggagattcagattac
gagtctcctcccggatcagatgaagatgaagataaacctgaatgtgagtatggcttggat
tgctacaggaggaaccctttgcataggaagcagtttaaacatacaaaaagaaaagttcca
aaaagacaaacagcattgaaacctcacaatggggatagtgatgatgaatatgatgatagt
ttcgttgatgattcagaagaagaaatcatagatgaggattcagattgggatccttctgtt
gataagaaaaagaaacaaaaagtggaaagtgagagcgatgaggaactagaagatgacatc
ataatggattctgattga

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