Ciona intestinalis (yellow sea squirt): 100185316
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Entry
100185316 CDS
T01056
Name
(RefSeq) prolow-density lipoprotein receptor-related protein 1-like isoform X1
KO
K04550
low-density lipoprotein receptor-related protein 1 (alpha-2-macroglobulin receptor)
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100185316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100185316
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cin04090
]
100185316
Membrane trafficking [BR:
cin04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
100185316
CD molecules [BR:
cin04090
]
Proteins
100185316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
DUF5050
SGL
cEGF
Motif
Other DBs
NCBI-GeneID:
100185316
NCBI-ProteinID:
XP_018670120
LinkDB
All DBs
Position
13:819612..848976
Genome browser
AA seq
1890 aa
AA seq
DB search
MTRDRYEGIAVDWVAENVYWTDSGSDQIKVVRMNGLYVYTIYRGGQLLRSIALHPVAGLL
FVTDWGTKAGIIRMKLDGTGVNWIATRLGWPNGITIDFGSDRLYYCDAQRDTIHSIDFNG
NNRQLVYDEAQFRTYGIDFYNGKLYWSDSHHLRGSINVCEVRTQCTNSSIKWLAKGLSLQ
LKDMVIFSASRQNGTNVCAVNNGGCEELCFHVGNNVRRCACAHGVLTANNRSCQPHKQYI
AYSESKLIQSINVDDLNDPNAPLPGIDNPDLMKSVIALAMDYKGHRMFYSDMTMRNIYSV
NTTYNGRSISNPQLVARDVGPVEGLAYHKVEHALYWTSLVQRDIRRQLLNSTNIEIIVPE
QDVNDRLRALVLYECARPNYIFWTNWNERNASVSRSTSGGRNIKSIISTKIKTPNALTID
IIVKQLYWADASLDKIERCDFDGGNRQVIISNGLDHIFSLAVLGKYLYWSDWGNRMILRA
NKWNGGALEIMRNRSYPHPLGVMAVYDDKCGRDPCDSASCKYRCVVLDDGSAACMCPDGV
ISDECGAHTVCTNDQFDCGEDQHLRCVAYIYTCDGTPHCSNGADETDIYCRTRSCRDGYW
MCENDTCIDKRRVCDGLSDCDDGSDEDPDIQCPNSPSRLSRLPCSYGMFSCGDGKCIPLS
WKCDSESDCDDGSDENCNHTCPLGHFQCSTSHKCIPLSYVCDADKDCFDGSDEANCSSKC
REDFFSCVGTGHCIPDTWVCDGEVECPDGSDELSCDISCGADKFRCDNGNCISMAWKCDR
EFDCDDHSDEVGCSYGACKQSMLECKSDAECYMHEWKCDGDMDCSDGTDEMDCPPSPTSA
CPVDHIPCGNGSCINLSKACNNVSDCTDGADEKLCFVNECENKQSNRCQQLCINRDYSYK
CGCRPGFQLSTDGYSCSEINECAHIVPPCSQICEKYPNTYECSCAPSYYRDPLNRRNCKA
GSHTGEPYILFANEYFLRQLSLNGSNYSLRLAHLSHMTALDFDWSGQKLYWSDTTRSGSS
IQRMNLNKTFHPSDFGPGSDQSGIETIHQSLQKVDGLAVDWIGRNIYWSERDKNTIEVSK
LDGSFRKVLVRSGLEEPQAIALLPDKGYLYWSDWGSDPHIGKIGMDGTDRSVIIHNRILG
QQTSHSWPGAALGWPNALTIDYAARKLFWADAKEGYIAHCDLDGANAAIVVQSPDNRDSR
IFSISLFEDSIYWTDWSQTSIMTSYKFRSIHNTTNVHPIHKVVHIPMDLKVVHPLRQPMP
ASPHPCLINNGDCSDLCLLSPGGGKSCSCPENFILQKDGISCVQNCSFSEFVCKNHKCIP
FWWKCDTVDDCGDYSDEPDHCRHFFCTPGMYQCANTTKYTNNSCISPSAICDGTPQCTDG
SDELNCDHHVCLPTQFRCSHPPKCILRMFRCDGKKDCDQGEDEIGCAPVSCSSTEYECQP
SPNNETSCIPSRWKCDGDVDCYHGDDETNCTVTTCMDSEMKCSNTGPCISKSWACDGEND
CRDGSDELPSICGNKTCNSDHFMCGNGILCIPNSWVCDSDNDCGDNSDERNCTNTPCASG
EISCTFTQQCVKKSAKCDGKYDCLDQSDELYCHVTCNKDQFRCEKPPLCIPLSYKCDGVP
HCNNGTDEINCKGTASKCCGNATFTCMDGACIPHVWKCDGELDCPDGSDEGPVCSVFQCP
PDRPYRCHTQDICLPLNKLCDGINNCGSHNDDETTSVCKAADTYAGHSANSTHCLLWRKH
LGSRSGNPPNPVGEHGFVCSSGECTPYSTLCDGVENCEDGSDEIGCFSGACNSQTNPCGF
VIGSTCKPLPPTAKGGRYDSYCSCEHGLQLKHGRFGLSCFDIDECSTFLPCSQSCRNVYK
GFRCNCFLDGGNLTGCFVAWPPTHMRFPHY
NT seq
5673 nt
NT seq
+upstream
nt +downstream
nt
atgacacgagatagatatgaaggaatagctgtggattgggtagctgagaatgtttactgg
actgactccggatctgatcaaattaaggtagtgcgaatgaatgggttgtatgtttacaca
atttatcgcgggggtcaattgttacgctccatcgcccttcaccctgttgctgggttattg
tttgtcactgactggggcaccaaagctggaattatccggatgaaactggatggaaccggt
gtaaactggattgcaactagacttggttggccaaatgggattactatcgattttgggagt
gatagattatattactgcgatgcccaacgtgatacaatccattcaattgatttcaatgga
aataatcgtcaactagtttatgacgaggcacagttcagaacatatggtatcgatttttac
aacggaaagctgtattggtcggatagtcaccatttacgaggatcaataaacgtatgtgaa
gttaggacccaatgcacaaatagttcaatcaaatggctggcaaaaggattatcgttgcag
ttaaaagatatggtcatatttagtgcaagtagacagaatggaacaaatgtgtgtgcagtt
aataatggtggttgtgaggaattatgttttcacgttggaaacaacgttcgacgatgtgca
tgtgcgcatggtgttttgacggcaaacaatagaagctgtcagccacacaaacaatacatc
gcatattctgaaagcaaactcattcaaagcatcaatgttgatgatcttaatgatccaaat
gccccattacctggaatagataatcctgacctcatgaaatccgtgatagcactggcaatg
gattataaaggccatcgtatgttctacagtgacatgactatgcgtaacatatacagcgtg
aacactacatataatggacgttcaatatctaatccacaacttgtagcaagagatgttggt
cctgtagaaggcttagcttaccacaaagttgaacacgctctgtattggacaagcttagtc
cagcgggacatacgacgtcagcttcttaattctaccaacatagaaatcatagtacctgaa
caagatgtaaatgaccgcttgagggcactagtgctttacgaatgtgcgagaccaaattac
attttctggaccaactggaacgaaagaaacgcgagtgtctcaagatcaacatctggtggc
cgtaatatcaaatcaataatttcaacgaagattaaaacaccgaatgctctcaccatagat
atcatagtgaagcaattatattgggccgacgcctcgttagataaaattgaaagatgtgac
tttgatggtggaaatagacaggttataatatccaatggtctggatcatatcttctccctt
gctgtacttggtaaatacttatactggagtgattggggcaataggatgatattaagagct
aacaaatggaatggcggggcattagaaatcatgagaaacagaagctaccctcacccactg
ggtgtaatggctgtgtatgatgataaatgcggtcgagatccctgtgactcggcatcttgt
aaatatcgctgtgtcgtacttgacgatggttcagcagcgtgcatgtgccctgatggggta
atatcggacgaatgtggggctcacacagtatgcacaaatgatcagtttgactgtggagag
gaccaacacctaagatgtgtggcttacatatacacatgcgatggtacacctcattgtagt
aatggggcagatgaaactgatatttactgtagaaccagaagttgcagggatggctactgg
atgtgtgagaacgacacttgtattgataaacgtcgagtatgtgatggattatctgactgt
gatgatgggagtgatgaagatcccgatattcagtgtcctaattcaccatcaaggttgtct
agattaccatgtagttatggaatgtttagttgtggagatggtaaatgcatcccattgagt
tggaaatgcgattctgagtctgactgtgatgatggttcagatgaaaattgcaaccataca
tgtccactcggccacttccaatgctcaacctctcataaatgcatcccattgtcttatgtt
tgtgatgcggacaaagactgttttgatgggagcgacgaggcaaactgttcgagtaaatgt
cgagaggatttcttcagttgtgttggtacaggtcattgtatacctgacacctgggtttgt
gatggggaggtggaatgtccagatggatcggatgaattgtcatgtgacatctcatgtggc
gcggataagttccgatgcgataatggaaattgtatttctatggcttggaaatgcgatcga
gagtttgactgtgacgatcatagtgatgaagttggttgcagttatggcgcatgtaaacag
tcgatgttagaatgcaagagtgatgctgaatgctacatgcatgaatggaaatgtgatgga
gatatggattgtagtgatggaactgatgaaatggattgcccaccttctcctacaagtgct
tgtcctgttgatcacattccttgtggaaatggttcatgcataaacttgagcaaggcctgc
aacaatgtatctgactgtactgatggggcagatgaaaagctatgcttcgtcaatgagtgt
gaaaataagcaaagcaatcggtgccagcagttgtgtattaacagagattacagttacaaa
tgtggctgcaggcctggtttccaactaagtactgacggttattcgtgctcggaaataaac
gagtgcgctcacattgtacccccatgttcacaaatatgtgagaaataccccaacacctat
gaatgcagttgtgccccttcctactatagggatccattaaatagaagaaactgcaaagct
gggagtcacacaggagaaccatatatattgttcgctaacgaatattttcttcggcaactt
tctttgaacggttcgaactacagcttgcgattggctcatcttagtcacatgaccgcgctt
gattttgattggtcgggacaaaagttgtattggagtgatacaacaagatctgggagttct
atacaaagaatgaatttaaataaaacgttccaccccagtgattttggtcctggaagcgac
caatcagggatcgagacgatccaccaatctttacagaaagttgatggattggctgttgac
tggattggaaggaacatatactggagtgaaagggacaagaacacgatagaggtttcgaaa
ttagacggaagtttccggaaagttctcgtcaggtctggattggaggaacctcaagctatt
gctttgttaccagataaagggtacctgtattggtcagattgggggagtgatccacatata
gggaaaataggaatggacggaacagacagaagtgttataattcataacaggatactgggc
cagcagacatcacacagttggccaggagctgcccttggttggcctaatgcactaactatt
gactatgctgcaaggaagctattctgggctgatgctaaagaaggatatattgcccattgt
gatttagatggcgctaatgctgctattgttgttcaaagccctgataacagagacagccga
attttttccatctcactttttgaggatagtatttactggacagattggtcacaaacatct
attatgacatcatacaagtttaggtcaatccacaatactacaaatgttcatcccattcat
aaagttgtgcatattcccatggatttaaaagtagttcacccactaagacagcccatgcca
gcgtcaccccacccttgtctaataaacaatggcgattgttctgatttgtgtctactgtca
cctggtggaggaaaatcatgcagttgtcccgaaaattttattttacaaaaagacgggatt
tcgtgtgtacagaactgtagttttagtgagtttgtatgcaagaaccacaaatgcattcca
ttctggtggaaatgtgacactgttgatgactgtggtgattattcggatgaacctgatcac
tgtcgtcattttttctgtacaccaggcatgtaccaatgtgctaatactaccaaatatacc
aacaactcatgtattagcccaagcgcaatatgtgatgggacaccacagtgtactgatggg
tcagatgaattaaattgtgatcaccacgtatgcctccccacgcagttccgatgctcccat
cctcccaaatgcatcctccggatgtttagatgcgatgggaagaaggattgtgatcaagga
gaggatgaaattggatgcgcgccagtttcgtgctcatcaactgagtacgagtgtcaaccg
tcaccaaacaacgagacctcctgtattccatcgagatggaagtgcgatggtgacgtggat
tgttaccatggcgatgatgaaacgaactgcactgttactacatgcatggattctgagatg
aaatgttcgaatacaggcccgtgtataagcaagtcgtgggcatgcgatggtgagaatgat
tgtagagatggtagcgatgaattaccttctatatgcggcaacaagacatgtaactccgat
cactttatgtgtggtaatgggatattgtgtattcctaattcatgggtttgcgattccgat
aatgactgtggagataatagtgatgaaaggaattgcaccaacactccatgcgcatctggc
gagatctcgtgcacatttactcagcagtgcgtgaagaaatcagccaagtgtgacggaaag
tatgattgtctcgaccaatcagacgagctgtattgtcatgtgacctgcaacaaagaccag
ttccgatgtgagaagccacccttatgcattccgttgtcgtataaatgtgatggtgtacct
cactgtaataatggaacagatgaaattaactgtaaaggtacagcttcgaaatgttgtggt
aacgccacattcacgtgcatggatggagcttgtatacctcatgtatggaaatgtgatggt
gaattggattgtcctgatggtagcgatgaaggccctgtgtgttctgtcttccaatgccct
cctgacagaccttacagatgtcacacccaagatatatgcttaccgttaaacaagttatgt
gatggaattaacaactgtggatcgcataatgatgatgagacgacatctgtttgtaaagcc
gcagatacatatgcaggtcactctgccaactctacacactgcctcttgtggcgaaaacat
ttggggtcaaggtcggggaatccccctaacccagtgggtgagcatgggtttgtttgttcg
tcgggtgaatgcaccccgtattcaactttatgcgacggggtggaaaactgtgaagatgga
tccgatgagattggatgttttagtggtgcttgtaactctcaaaccaacccctgtggtttt
gtgattggttcaacttgcaaaccactcccccctactgctaagggtgggaggtatgactca
tattgttcatgtgaacatggattgcaacttaaacatgggagatttggtttaagctgtttc
gatatagatgaatgctctacttttttaccatgctcacaaagttgtaggaatgtttataaa
ggatttcgatgcaattgtttcctggatggaggaaatctgactgggtgttttgtcgcatgg
cccccaacccatatgcgattcccacattattaa
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