Ciona intestinalis (yellow sea squirt): 100185596
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Entry
100185596 CDS
T01056
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like isoform X3
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cin03036
]
100185596
03400 DNA repair and recombination proteins [BR:
cin03400
]
100185596
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100185596
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
100185596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
100185596
NCBI-ProteinID:
XP_002122141
Ensembl:
ENSCING00000003560
LinkDB
All DBs
Position
Unknown
AA seq
1854 aa
AA seq
DB search
MNPLPFAFAELIDNALAATARNVGPRIIELSLHFNTSTAEHMLCVYDNGQGMSSRQLNNW
AIYRLSKFNRKDRRDIGEHIPYHDDENLATPKSLNSDISWFGVGGKQAIFFIGNSTRIIT
KQRNSCDVHEFTMSKNEFKRKEKNKEAIFAGYIRNRTFGDSSHIAHSDDVIRDFINSEND
DSFTRVIVSGISEHHTHFMKHGFDIWNRQLAHIYHYYIHGPEGNTSMSRNRKNIGVSDVN
ILVTLHENGQKILSTNLRDIEDDLETKYIRTSANTFEFVAKSDGENGGIVEGMIRYHPFL
YDRETYPIDSTQESSAEYDGTGEPPGRGRRPIFECYWNGRLIPYTFIDDFDWCKIPRKQA
ALLGDCFYRISGCLFSNDKFQVSTNKLTFIDLDSKLKDRNTTFNHMVLGEEQNGQINRHF
VDWLKECHEKHDKQVKFLKHVSVVMKNDGTHKSKHTLYKAIEWEGRVFSKGQLVRTQRTV
PVICGTIRKFLLPGEYDGDVYSVGGEFELIQEPQALYGEIRCFPLSKLDRNVSVEIVQDL
VQREEGKLPATIEVEWPDNDEVTEGQVSFAGVNIGAMQAVILNQDDEPIHKLFSNNETRK
LLVEQRVYLSPPSGEMSVQVSSHVTSHSKNGDYYFERIENLKAPGNYSVTIQAALDESGV
YVYGDGRKLPSLTINFCIQESPPHRFMVGILESPLRIGCPFDLPLDMQDDNGHSTRPTFE
VDPILESNGLELSYDSTEIKGNSLVIKDVVAIGDVMSQQGKNFQMKVIVPGLALESQTLK
IRLLPGDPHSLAITSFNDGFEEIQFEQGTTELPEFLTFENSSNISLNVGVVDIAGNLTLK
PRLTVQCKFSGSPGLPTWTCNCSNTGYGVIGGKIKLKHLKSEKKIQAKIEVQGSKEITAL
QQKFILKPSSKICFLNVFYKKPSAANNEKVEKLKRGQDMYFEAGETMQNISFQLLDEAKR
SVPIDVSKHASNIQVNWTDEISSSDLENGFLPDVFIPTNVSDTRFCQVTYLGEKNVHFSF
NIKPIAGQPAGIKVTIHGSRETRIGMIRREPISISLLDSFSNQLNIAPNQLGLVSVKAEG
LDESILSKYIEGKCVVVSDIQFNQGPLGSKELVISYGSDIQEYAVLQLVAGTPVTLQVKA
WGDDPLPVLSGTRIRDPISVQLLDGWGNPSPENGVKVLLGKDPGLKLTPSAGVLKTNDDG
FVSFQKFSFSGKCGEFWLQPRAIYNRRAMEGRKLFISLLPNTETPVSIQYRKSGQETTVT
VGTPWPEYDVDILSEEETRVTTSVNLCMVIWKGKTKNDEIPSNAEWHRAVASNGHHSFHG
IKSPTKVGEYCCVFCVTENLASKTAVLTSEVFTMKTVAGVPKCLLPSSEPGTPTVSNAHV
AVNRILIRNLKLQLMDGMGNLCNDDIKSNISVTIQPCDQTLKCSETPMFVGNASRLFVPI
RKGEALLQNLTLQENSPGIDGSQYILHCEIQNDERNIQPYMLKFLFYNDAKKYAQMSELV
QQRDVLLHAVKMYEETFSAHKTLFDEIKQGCAEADKKKTNLIRDLQKLGLSISSSCQSCD
ISQLIEHCSLRRNSLMHDDKRKCLLPEYQDASSEVLGKIGHLALISDDDAACVLSWHMSA
DMDCLVTFTTKKAREIHKLSDGRQQVLPLDSIYKKNLSDWKKQLPHVKARISQDQVTGNP
IFARKLLNFQKDQVNCRMIFTMLLGDTILIDDLDSANQYRNMVVKHTHCPTILTRNGHRI
RSNGKFGGNQNRAPAVEKLRGMVFGAPMSEEYATCVKQIEILENIKSVIEEIHSSQEELE
SLQLETDEMKFKEQEHKEAQERLNAIEKKIGFHNPQRRSLPESTRQTRKRFKKS
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atgaacccattaccttttgcattcgctgagctaatagacaatgctttggctgctacagcc
aggaatgttggtccacgaataattgaattaagtttgcattttaacacctcaactgccgag
catatgctatgcgtatatgacaacggacaaggcatgtcatctcgacaactcaacaattgg
gcgatttatcgactttcgaaatttaatcgtaaagatcgaagggatattggagagcatatc
ccatatcatgatgatgaaaacttagctaccccaaaatcgctcaacagcgacatctcctgg
ttcggtgttggtggaaaacaagcaatatttttcatcggaaattcaacacggataataaca
aaacaaagaaattcgtgcgacgtgcatgagttcacaatgtccaaaaatgaattcaaaaga
aaggagaaaaacaaggaagcaattttcgctggctacattcggaatagaacgtttggagac
agttcacacatcgcacattcggatgatgttattcgggattttattaactcggaaaatgat
gatagttttactcgtgtcatcgtgtctggtatatcggaacatcacacgcatttcatgaag
catggatttgatatatggaatagacaacttgcacacatataccattactatatacatggg
cccgaaggcaacacatcgatgtcaagaaacaggaaaaatattggggtttctgatgttaat
attttggtcactctgcacgaaaacgggcagaaaattttgtcgacgaaccttcgtgatata
gaagatgacctcgagacgaaatacattcggacctccgcgaatacttttgagtttgttgcc
aaatctgatggagaaaatggtggcatagtggagggaatgatcagatatcatccattctta
tatgacagagagacttatcctattgacagcactcaagaatcaagcgcagagtatgacggg
acaggggaacccccgggaaggggaagacggcccatattcgaatgttactggaacggtaga
ctaattccatacacttttattgatgattttgattggtgcaagataccacgcaaacaagca
gcattactgggtgattgtttttatcgaatttctggttgtctgttttccaatgataaattt
caggtaagcaccaacaaactgacttttattgacttggactcgaaactaaaagacagaaac
acgacattcaaccacatggtgttaggtgaggaacaaaacggacaaattaatcggcatttc
gttgactggttgaaagaatgtcacgaaaaacatgataaacaggtgaagtttttaaaacat
gtttctgttgtaatgaaaaacgatggcacacataaatctaaacatacactgtataaagct
atagagtgggaagggagggtctttagtaaaggacaattggtacgaacgcaaagaaccgtt
ccagttatttgcggaacgattcgtaagtttttacttcctggtgagtatgatggagatgta
tattcagttggtggagaatttgaacttattcaggaaccacaagcgttatacggagaaatt
cgctgctttccgttgtcgaaattggatcgcaacgtttcggttgaaattgttcaagacctt
gttcaacgagaggaagggaagctccctgctacaattgaagttgaatggcctgacaacgat
gaggtgactgaaggtcaagtttcgtttgctggggttaatataggtgcaatgcaagccgtt
attctcaaccaggatgacgaaccaatccacaaactgttttcgaacaacgagactcgaaaa
cttctcgtcgaacaaagggtttatctatccccccctagtggagaaatgtccgtacaagtc
tcaagtcatgtgacgtcccactcaaaaaatggcgactattattttgaaagaatagaaaac
ctaaaagctcccggcaactatagcgttactatacaagcagcattagatgagagtggggtg
tatgtatacggtgacggtcgtaagttgccatcgctgacaattaatttctgtatacaggaa
tctccaccacacaggtttatggtgggcattttggaatcgcctttgagaataggttgtcca
tttgacctaccattagacatgcaagatgataatggacattctacaagacctacttttgaa
gtggatcctatactagagtcaaacggtttagaattatcttacgattctacagagataaaa
ggaaattctctcgtcataaaagacgttgttgctattggcgatgttatgtctcaacagggc
aagaattttcaaatgaaagtgattgtacctggtcttgcattggaatctcaaacactgaag
atacgtttactgcccggtgacccccattcacttgctataacttcatttaatgatggattt
gaagaaattcaatttgaacaaggtacaactgaactaccagaatttctcacttttgaaaat
tcttcgaatatttctctaaatgttggtgttgttgatatcgctggcaacctgacattaaaa
ccacgtcttactgtgcaatgcaagttttctggatcacctggtttaccaacctggacttgc
aactgctccaacactggttatggtgtaattggtggaaaaattaaactgaaacatttaaaa
agtgagaaaaaaattcaagctaagattgaagtacagggctctaaagagatcacagcgttg
caacaaaaattcattttaaaaccttcgtcaaaaatttgttttttgaacgttttttataaa
aaaccttcagcagcaaacaacgaaaaagtcgagaaactaaagcgaggtcaagacatgtat
tttgaagctggtgaaacgatgcaaaatatatcgttccaacttctagatgaagcaaaacgc
agtgtacctattgatgtatctaaacatgcttcgaatatacaggtaaactggacagatgaa
atttccagctcagatttggaaaacggtttcttaccagacgtatttattccaactaatgta
tcggacacaaggttttgtcaagttacttaccttggagaaaagaacgttcatttttctttc
aatataaagccaatagcagggcaaccagctggaataaaagttacgattcatggaagtcgt
gaaactcgaattggtatgatacgaagggagcccatctcgatttcactacttgatagtttc
agtaaccagcttaatatagccccgaaccaacttggtttggttagtgttaaagcagaaggc
ttggacgagtctattctatcaaagtatatagagggcaaatgtgttgtggtcagtgacatt
cagtttaatcaggggcctcttggtagcaaggagctagttatttcttatggatctgatata
caagaatatgctgtgctacaacttgtagctggtacgccagtcacattacaagtaaaagcg
tggggcgacgacccactgcctgtgttaagtgggacccgaattcgggacccaatctcagtt
cagctgctggatggttggggaaacccctcacctgagaatggggtcaaagttttactgggt
aaggacccgggtttgaagctcaccccttcggctggggtcttgaaaacaaacgatgacgga
tttgtttcgtttcaaaaattctctttctcaggcaaatgtggcgaattctggcttcagccg
cgtgctatttataaccgaagagcaatggaaggtcgcaaattgtttatatctcttctcccg
aacacagaaactcccgtttcgatacaatatcgaaaaagtgggcaagaaactactgttaca
gttggtaccccttggccagaatatgacgtcgatattttatctgaagaagaaacaagggtg
acaacatcggttaacttatgtatggtcatttggaaaggtaaaacaaaaaacgatgaaatc
ccctcaaatgcagagtggcaccgtgccgtggcatctaatggacaccatagttttcatggc
atcaagtcaccaacaaaagttggtgaatattgttgtgttttttgcgttacggagaatctt
gcttcaaaaactgcagttctcacaagtgaagtttttaccatgaagacagtagcaggtgtt
ccaaaatgtctacttccaagttctgaaccaggaacaccaacagtatcaaacgcgcatgtt
gctgtaaatagaattctaattcggaatcttaaactccaattaatggacggaatgggaaac
ttgtgcaatgacgacataaagtctaatatctccgttacaatacagccctgtgatcagaca
ttaaagtgtagcgaaacccccatgtttgtgggaaatgcttcgagactgtttgttccaatt
cgtaaaggagaggctttactgcagaatctaacattgcaagagaattcacccggcatagac
ggctcacaatatattctacattgcgagatacaaaacgatgaaaggaacatacaaccgtat
atgttaaagttcttattttataacgatgcgaaaaaatacgctcaaatgagtgaattagtt
cagcaaagagacgttttattacacgctgtaaaaatgtacgaagaaactttctctgcacac
aaaacattgtttgatgagataaaacaagggtgtgcagaagctgataagaaaaaaacgaat
ttaattcgcgacctgcaaaagttggggttatctatctcaagttcgtgccagtcatgtgac
atttcgcagttgatcgaacactgctcgttgaggcgtaacagcctaatgcacgacgataaa
agaaaatgtttattgccggaataccaggatgctagtagtgaagttttgggcaagattggt
cacctagcattaatctcagatgacgacgcagcgtgtgtattatcgtggcatatgtccgct
gatatggattgtcttgttactttcacaactaaaaaggcaagagaaatccacaaactatct
gacggcagacagcaagttttacctttagacagtatctataaaaaaaatctttccgactgg
aaaaaacaactgccgcatgtaaaagcaagaatttctcaggaccaagtaactggaaaccca
atttttgcgcgaaaacttttgaatttccaaaaagaccaagtcaactgtagaatgattttc
acgatgcttctgggcgatactattcttatagatgacttagattctgctaatcaatacaga
aacatggtggtaaagcacacgcactgtccaacgattttaacccgcaatggtcaccggatt
cgtagcaatggaaaatttggtggtaaccaaaaccgagcaccagctgtcgagaaacttcgg
ggcatggtgttcggtgctccaatgtcagaagaatatgcaacatgtgttaaacaaattgaa
attctggaaaacattaagtccgttatcgaagaaattcattcgtcacaggaggagctagag
agtctacaacttgaaacggacgaaatgaaatttaaagagcaggaacacaaggaggcacaa
gagaggctaaacgcaatcgaaaagaaaataggtttccacaacccacaacgaagaagttta
cctgaatctacacggcaaaccagaaaaagattcaaaaaatcgtaa
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integrated database retrieval system
