Ciona intestinalis (yellow sea squirt): 100186340
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Entry
100186340 CDS
T01056
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen34-like
KO
K15323
tRNA-splicing endonuclease subunit Sen34 [EC:
4.6.1.16
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cin03016
]
100186340
Enzymes [BR:
cin01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
100186340
Transfer RNA biogenesis [BR:
cin03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
100186340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
Motif
Other DBs
NCBI-GeneID:
100186340
NCBI-ProteinID:
XP_002123488
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All DBs
Position
3:complement(724307..725513)
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AA seq
307 aa
AA seq
DB search
MAEDGSCEPNIEIYYCHGKVLIWDQSVVSFIRKKHRIVGSNVGCLTTKPRQNAQFGLPLQ
LTNIEAKYLLEHCNACLLDSSVFPPYVDLEEEAEKSKRKLQEQYEIQTILKQNLKLDEIK
NMKGLIKNGKISKQKQRKMISEDKELNKQDGTITETNSEEVFNEKQFKQFAESELKKVER
YGQEQTWIKMEHKSKFSSFMQKIDHTKIKLTEEESKLYLIFCDLHNQGYFLTDGVKFGGN
FLVYPGDPGLYHSTYILLHIPYEKEISATEFATFGRLASSVKKTLLLASIDKENKVVYSS
MSWSGIV
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagatggaagttgtgaacctaacatagaaatatactattgtcatggtaaagtt
ctaatttgggaccaaagtgttgtttcttttattcgaaaaaaacaccggattgtaggtagc
aatgtcggttgcctcacaaccaaaccaagacagaatgctcagtttgggttaccactgcag
ttgaccaatatagaggcaaaatatttactagagcattgcaacgcttgcttattggattct
tctgttttccctccttatgttgatttagaagaagaagcagaaaagtccaagaggaaactg
caggagcaatatgaaatccaaaccatcttgaaacaaaacttaaaattggatgagataaag
aatatgaaaggcctgattaagaatggtaaaatatcaaaacaaaaacagcgaaaaatgata
agtgaagataaagaattgaacaaacaagatgggacaataaccgaaaccaactcagaagag
gtctttaatgaaaaacagttcaaacaatttgctgagtccgagttaaaaaaagttgagcgc
tatgggcaagaacaaacttggataaaaatggaacataaaagtaaattctcatcttttatg
cagaaaattgatcatacgaaaataaaactcacagaagaggaaagcaaactttatctgata
ttttgtgacttgcacaatcagggctattttctaacagatggtgttaagtttggtggaaac
tttcttgtgtacccaggggatcctggtttataccactctacttatattttattacatatt
ccttatgagaaagaaatttcggcaactgaatttgcaacttttggacgattagctagtagc
gttaaaaagactttgttattagcgtcaatcgacaaagaaaataaagttgtttattcttct
atgtcatggtctggtattgtttaa
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