KEGG   Citrus sinensis (Valencia orange): 102608121Help
Entry
102608121         CDS       T02983                                 

Definition
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    102608121
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cit03400]
    102608121
Enzymes [BR:cit01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102608121
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     102608121
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 DNA_ligase_A_C BRCT PTCB-BRCT RNA_ligase LIG3_BRCT
Motif
Other DBs
NCBI-GeneID: 102608121
NCBI-ProteinID: XP_006474277
LinkDB All DBs
Position
4
AA seq 1174 aa AA seqDB search
MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRER
GSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGTAPNAGNFPMVAAEVLQRRQGMI
SGGLTIKELNDLLDRLASSENRAEKTSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR
KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD
GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERH
ELLQKVVKPSKGRLETLVPDHGLNSHVRPQGKEHEMTDIPLPFNKGEPCWSLVAHNVDEV
EKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGR
RGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRA
PPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDK
PWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQT
DVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG
LKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWD
LDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVIL
GLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKL
HVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQESYLELCEEDLDMEEPSSTLETSDKQNVS
SFPDGDGKQRGTRGVSPASPKREGKRKRGRPAGGSAKKRKSTVNLARRKRPHVRNKPSKI
YQNESDESNASDETEKKEEINREENHEDREMDDEENLETRQTNVVEDLESLDRGKALQQE
VVKDFGKEKQTVRAPDIEMRERYHSKDSETTDKQQVDAVQAMLLDMIPSLGMKNEKTTNP
IPKEESSSAEPSAEPTKKKKVSYKDIASKLLKDW
NT seq 3525 nt NT seq  +upstreamnt  +downstreamnt
atgacgaagacagaagagaccgaggtgatcgttttagtgagtcttttcaactggatacaa
aaaaccaaaccagcggccaagaaacggtccaagttccgcaaatttctcgatacttactgt
gactcggtggactactttagtgcattgcggctgattctgccgtcgttggaccgggaaaga
ggcagctatggcctcaaagagtcggtgctcgccaactgcctcatcgatgccctgggcatg
tctaaagactccgctgacgccgttcggcttattaattggcgcaagggaggcaccgctcct
aatgccggaaatttcccaatggtcgctgctgaggttctgcaacgtaggcaaggaatgatt
tctggtggacttacaattaaggaattaaatgacttgcttgatcgcttggcttcaagtgaa
aacagggctgagaagacttcagttctgtctactctaattaagaagacaaatgcacaggaa
atgaagtggattatcatgataattctgaaagatctaaagttgggaattagtgaaaagagc
atattccatgagtttcatccggatgctgaggacctgtttaatgtgacatgtgacttaaaa
ctggtttgtgagaagttaaaggatcgaaaccagagacataaacggcaggacatcgaagtt
gggaaagctgtgcgcccacaactagctatgagaataggtgatgcacatgctgcctggaga
aagcttcatgggaaagaagtggtcattgagtgcaaatttgatggtgatcgcattcaaatt
cataaaaatggttcagaaatacactacttctcaaggagctttcttgatcactctgaatat
ggacatgcgatgtcaaagattattgagcaaaacgttttggttgacaggtgcatactcgat
ggtgaaatgttggtctgggacacttctttgaatcgatttgcagaatttggttcaaatcag
gaaatagccaaggcagcgagggatggactttcaagtgatcgacagttgtgctattttgca
tttgatgttctgtatgtgggagatactagcgtcattcaccagagcttgaaggaacgacat
gagcttctccaaaaagttgtgaagccttcgaaaggtcgtttagagaccttagtacctgat
catggtctcaattctcacgtgagacctcaaggtaaagaacatgagatgactgatattcct
ttaccattcaacaaaggggaaccttgctggtcacttgttgctcataatgtggatgaggtt
gagaagttcttcaaagaaaccattgagaatagggatgaaggaattgtattgaaagacctt
ggttcgaaatgggagccaggtgatcgaagtggaaagtggttgaagctgaagcctgagtac
atccgtgctggttcagacttggatgtactaataattggaggatattatggctccggtcgt
cgtggaggggaggttgctcagttcttggttgccctggcagagcgtccagctccagataca
tatcctagaagatttatctccttttgccgagtgggtactggtctctctgatgaggaacta
gatgctgttgtaactaagttgaagccttattttaggaaatatgaatatccaaaaagggca
cctccaagtttttatcaagttacaaataattcaaaggagagacctgatgtttggattgag
agccctgagaaatcaataatactttctattaccagtgatattcgaaccataaggtctgag
gttttttctgcaccatacagcctgagatttccacgcattgatagagtgagatatgacaag
ccttggcatgattgccttgacgtgcagtcatttgtagaacttgtgcattcaagtaatggc
accactcagaaggggaaagaatatggaggcttgcaagatgataagccaaaacaattcaga
tcctccagaaagggagagaaaaagaatgtgtctattgttccttctcattttcttcagact
gatgtttctgacataaagggggaaacctcaatattttcagatatggtgttttattttgtt
aatgtacctccagcctattcccttgactccttgcacaaaatggttgttgagaatggagga
acattttcaatgaatttgaataactcagttacccactgtgttgcagctgataacaaaggg
cttaaatatgaggcagcaaaacgtcgtggagatgttattcattactcttgggtcttggat
tgttgttcacaaaagaagcttctccaattgcagccaaagtactaccttcatctatctgac
tcttcgaagaaaaagctacaagaagaagttgatgaattttctgacctgtacttttgggat
cttgaccttgcagatatcaaacagctcttaagcaatgttgatagatcagaagaccccaaa
actattgattattataagaagaagtactgtccacaggacaagtggtcttgctttcatggc
tgctgcatttacttctaccattcaacagagcctttgagtcctgattgggaagttatattg
gggcttgccctgaggagattgaagcttgaaatttcctttcatggcggtaaagtctgcaac
aatcttgcaaatgctacccacgtggtggtcttgtcagtactgggatatgatgtgaacttt
aattctcttacagaaagtttcactgccagagagaaacatcttttatggaacaagaagttg
catgttgttagatcccagtggttggaagattgcttggcgaaggagcaaaagtcggaagaa
tacgaatacagcttgaagcccactggcatgcaagagtcgtaccttgaattgtgcgaagaa
gacctggatatggaagaaccctcatctacattggaaacttcagacaaacagaatgtgtca
tctttcccggacggtgatggtaagcagagaggaaccagaggtgtttcccctgcctcacca
aagagagaaggcaaaaggaaaagaggaagacctgctggtggaagcgcaaagaaaagaaaa
tcaactgtcaacctagctcggagaaaaaggccacatgttagaaataaaccttcaaagata
taccaaaatgaatctgatgaaagtaatgcttctgatgaaacagaaaaaaaggaagagatc
aatagggaagagaatcatgaagatcgtgaaatggatgatgaggaaaatctggaaactcga
cagactaatgtagtggaagatttagaatcattagaccgaggcaaggcacttcaacaagag
gttgtcaaagattttgggaaagaaaaacagactgttagagctcctgatattgaaatgaga
gaaaggtatcacagcaaagacagtgagacaactgataagcagcaagttgatgcagttcaa
gccatgttactggacatgattccaagccttggaatgaagaatgaaaaaactacaaatccg
attccgaaagaagagtcatcatctgcagaaccaagtgcagagcctacaaagaaaaagaaa
gtcagctacaaggatattgccagcaaactactcaaggattggtag

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