Citrus sinensis (Valencia orange): 102610335
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Entry
102610335 CDS
T02983
Name
(RefSeq) nuclear poly(A) polymerase 3
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102610335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102610335
Enzymes [BR:
cit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
102610335
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
102610335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
Motif
Other DBs
NCBI-GeneID:
102610335
NCBI-ProteinID:
XP_006488811
LinkDB
All DBs
Position
1:complement(join(24232011..24232400,24232655..24232819,24233136..24233441,24233565..24233627,24234155..24234268,24234516..24234677,24234777..24234839,24234926..24235033,24235274..24235351,24235440..24235703))
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AA seq
570 aa
AA seq
DB search
MAAYACNNNQSNNLVVYPYNFVDFYPQNANFGVVTPQSLGVINPNLISPSQVLVPCNSPV
FLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWV
KRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHN
MLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYARLHVLSVPENVDVLNPFFLRDLDE
TSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAH
VCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHE
YCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASN
QDDLGDWVGWVKSRFRSLILKLEEVQGLCDPNPTEYIDVDVTEPHVVFYWGLQPGRTNLL
DIVAVEKDFLKNIHNGFQGSPGRMGLLVVQASQLSKSSQLDFGSGRRTKACWKNLDYNLP
RIPVYSQHLPNYIIGYVDAKADSKYPSAGG
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcagcttatgcttgtaataacaatcaaagcaataatcttgttgtgtatccttacaat
ttcgttgatttttatccccaaaacgctaattttggtgtcgtaactccgcaatcacttggt
gtaataaaccctaatttaatttccccgagtcaagtgcttgttccgtgcaattccccggtc
tttttagttccttcttttaatttccctttgaatccttctgtcttagatcaaatggacgag
gaaagatcgctctcgcttgttcagttgatgaccaatgaaggacttgtgccctcaacagaa
gaggaggataagagaagaaatgtcattcaaaagcttaaagagatagtcttggcatgggtc
aagagagttgcttggcaacggcgattgccaaaagaacagattgcagagacacatgcaacg
atattgacatatgggtcttatggccttggagttcatggttcagagtcagatattgatgct
ttatgtcttggtcctgaatttgccacaatggcggaggatttttttgttgttctgcacaac
atgcttaagagcagacctgaagtatcagagattcactgtgtgaaggatgcaaaagttcct
ttgatgcgattcaagtttgatgggatcttgatcgaccttccctatgcgcgtcttcacgta
ttatctgttcctgaaaacgtagatgtgctcaatccattctttttgagggatcttgatgaa
accagttggaagagcttgtctggagtacgagcaaataaatgtattcttcagcttgttcca
gacttggagaaattccagccagtgctgagatgtatcaaattgtgggcaaaaaggcgagga
gtgtatggtaatttacatgggtttcttggaggagttcatttggctatcctcgtcgctcat
gtttgccaaaatcatccaaagggcagtttgaatactctggttgcaaacttctttaagaca
tatgcctattggccttggcctacaccagtcatgctgcaggatccaatgttaccagctgct
ggatatccttctgagacacggtccttaatgcctatccgattgccgtgtagtccgcatgag
tattgccattccaatattactaggagcacattctacaaaatcagaacagagtttcttcgt
ggccataatacaactagggatcttatgaggccagattttgattggcacttcctttttgag
ccttttccatactcaaagaagtatgcacgatttgtcagggtttacctttcagcttctaat
caagatgaccttggagactgggtgggttgggttaagtcacggtttcgatctcttattctg
aagttggaggaagtacaaggtctttgtgaccctaatcctacagaatatattgatgtggat
gtgacagagccgcacgttgttttctactggggcttgcaacctgggagaactaatttgcta
gatatagtggctgttgaaaaagatttcttgaagaatattcataatggctttcaaggctcc
ccaggacgaatggggttactcgtcgtgcaggcttctcagctgtccaagagttcacagctt
gattttggaagtgggaggagaactaaagcttgttggaaaaatctcgactacaatcttccg
cgaatccctgtgtactcgcagcatctgcccaactacatcattgggtatgtggatgctaaa
gcagactccaagtacccaagcgctgggggatag
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