KEGG   Citrus sinensis (Valencia orange): 102612408
Entry
102612408         CDS       T02983                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    102612408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102612408
   03009 Ribosome biogenesis [BR:cit03009]
    102612408
   04131 Membrane trafficking [BR:cit04131]
    102612408
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cit04147]
    102612408
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     102612408
Ribosome biogenesis [BR:cit03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    102612408
Membrane trafficking [BR:cit04131]
 SNARE
  SNARE associated proteins
   Others
    102612408
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    102612408
Exosome [BR:cit04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   102612408
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_2 AAA_5 AAA_33 AAA_22 CDC48_2 AAA_14 TIP49 RNA_helicase AAA_18 AAA_28 nSTAND3 AAA_17 Mg_chelatase ATPase_2 Parvo_NS1 IstB_IS21 Viral_helicase1 Zeta_toxin NACHT AAA_24 ABC_tran AAA_7 NB-ARC Vps4_C TsaE DUF815 Sigma54_activat Sigma54_activ_2 ResIII Rad17 ATP-synt_ab Zot UFD1
Other DBs
NCBI-GeneID: 102612408
NCBI-ProteinID: XP_006488039
UniProt: A0A067F9U4
LinkDB
Position
8:join(26972362..26972390,26972490..26972655,26973110..26973338,26973454..26974220,26974456..26974677,26974822..26974893,26975138..26975419,26975680..26976039,26976156..26976452)
AA seq 807 aa
MSHPAESSDANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGD
TILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCV
VAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDN
PEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGIGSEFRFA
EAGTGATTGADPFSTSAGGADDDDLYS
NT seq 2424 nt   +upstreamnt  +downstreamnt
atgtctcacccagctgaatcgtccgacgcgaattccgggaaaaaggactactccacggcg
attctggagaggaaaaaatcgccgaatcggctggtcgttgacgaggcgatcaacgatgac
aactctgtcgtcggcttgcaccctgacaccatggacaagctccagattttccgcggcgac
accattctcatcaaaggaaagaaaaggaaggacactatctgcattgctcttgctgatgac
acatgtgagcagcctaagataaggatgaacaaggttgttcggtcgaatcttagggttcga
cttggtgatgttgtatctgtgcaccagtgcccagatgtgaagtatggaaagcgtgttcac
attctgccaattgatgataccatcgaaggtgttaccggaaatctgtttgatgcattcttg
agaccttatttcacggaagcttatcgccctgtgaggaaaggagatttattccttgtcaga
ggaggaatgagaagcgtagagttcaaggttatcgagactgatccaggggagtattgtgta
gttgctccagacacagaaattttctgtgagggggaacctataaagagggaggatgaggat
aggttggatgaagttggttatgatgatgttggtggagtcaggaaacagatggctcagatt
cgtgagctagtggagctgcctctgaggcatcctcaactctttaaatcaattggtgttaaa
ccacccaaaggaatcttactttatggtcccccaggttcgggaaagacgttgatagccaga
gctgtggctaatgaaactggtgcattcttcttttgtatcaatgggccagagatcatgtcc
aaattggctggagagagtgaaagcaatctcaggaaagcctttgaagaagcagagaagaat
gctccatcaatcatctttattgatgaaattgattcaattgcccccaagcgtgagaagaca
catggtgaggttgaacgaagaattgtttcacagcttttaactcttatggatggtctgaaa
tcccgtgcccatgtcattgttattggagctactaacagaccaaatagtattgaccctgct
ttgagaaggtttggtagatttgatagggagatagatattggcgttccagatgaagttggg
cggcttgaagttctccgcatccataccaagaacatgaagctgtctgatgatgttgattta
gaaaggattgcaaaagatacacatggttatgttggtgctgaccttgctgctctttgtacc
gaagctgcactgcaatgcatcagggagaagatggatgtgattgacttggaagatgaaacc
atcgatgctgagattcttaattccatggctgtttcaaatgagcacttccaaactgcactt
gggacaagcaacccctctgctctgcgtgaaactgttgtggaagttcccaatgtcagctgg
gaggacattggaggccttgagaatgttaagcgggagcttcaagagactgttcaatatcca
gtggagcatccagagaagtttgagaaatttggcatgtcaccttcaaaaggtgtccttttc
tatggtccccctggatgtgggaaaactttactggccaaggcaattgcaaatgaatgccag
gcaaacttcatcagtgtcaaaggccctgagctgctcacaatgtggtttggtgagagtgaa
gccaatgttcgagaaatatttgacaaggcacgacaatctgccccatgtgttcttttcttt
gatgagctggactctattgcaactcagagaggaagcagtgtgggggatgcaggcggtgcc
gctgatcgggttttgaatcaacttctaactgaaatggatggcatgtcagctaaaaaaact
gttttcattataggggcgacaaacagacctgacattattgaccctgcccttttgcggcca
ggtcgacttgaccagttaatttatattcctctcccagatgaagattcacgccaccagatc
tttaaagcctgtttgagaaagtcaccagtctcaaaagatgttgatctgagagcgttggcc
aagtatactcaaggcttcagtggggctgacatcacagagatttgccaacgagcttgcaag
tatgccattagggaaaatatagaaaaggatatcgagagggagaggagaagaagggacaat
cctgaggcaatggatgaggatgctgccgaggatgaagtgtcagagattaaggctgctcat
ttcgaggagtccatgaagtttgctcgaaggagtgtcagtgatgctgatatccgcaaatat
caggcatttgctcagacgctgcagcagtcccgcggtattggatctgaatttaggtttgca
gaggcaggaactggggctacgactggtgctgatccgttttcaacctctgctggtggggct
gatgacgatgatctgtatagttag

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