KEGG   Citrus sinensis (Valencia orange): 102615682
Entry
102615682         CDS       T02983                                 
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102615682
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102615682
Enzymes [BR:cit01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     102615682
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102615682
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     102615682
SSDB
Motif
Pfam: Exo_endo_phos zf-C6H2 PDE12-like_N
Other DBs
NCBI-GeneID: 102615682
NCBI-ProteinID: XP_006492821
LinkDB
Position
6:join(19692503..19692660,19695549..19696305,19696821..19696907,19697008..19697091,19697171..19697257,19697360..19697446,19697588..19697641,19697719..19697810,19697910..19698024,19698195..19698342,19698510..19698655)
AA seq 604 aa
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR
KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG
NEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTY
TPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMG
HIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI
VCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKK
YEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCV
ANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKV
EPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFT
HCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKP
RARR
NT seq 1815 nt   +upstreamnt  +downstreamnt
atgctgagtgtgctgcgcgtgcaccttccgtcggatattcctattgtaggctgtgaactc
acgccgtacgtgctcttacggcgccccgataatgctgtcaccaccgaagatgtccccgag
tcggccccaattgatggtcatttcttgagatacaagtggtatcgtatacaaagtgataga
aaagttgctgtatgtagcgtacatccttctgagcaagccactcttcagtgtctaggttgt
gttaaggctaaaatacctgttgccaaaagttaccattgctcaccaaagtgcttctctgat
gcatggcagcatcatcgtgttcttcacgatcgtgctgcaagtgctgtaaatgagaatggg
aatgaagaggaggagttatttggccgtttcaatagcactggatctggagttatcaatgct
agcttatctggttctgcctcaaattctagcctgacgaatggttcaacacctttatatcct
gctgcagttacgcggagcggaggtgaaacttggtttgaagttggacgatcaaaaacatac
actccatcagccgatgatattggccatgtcctgaagtttgagtgtgtcgtagtagatgca
gaaaccaaactccccgtggggcatcccaacactctgttgacttcccgagtcattcctgcc
ccttctcctagtcctcgtcgcttgttcccggtcaatggatctgacatgaacatgatgggg
catatcgattctgatggccgtatttcaagcactggaactttttctgtgctctcatacaat
attttgtctgatgtgtacgcaacaagcgaatcatatagttactgcccttcatgggctcta
tcgtgggcatatcgcagacagaatttgttgcgggaaattattggctaccgtgctgatata
gtttgtcttcaggaggttcaaaatgatcactttgaggaattttttgcccctgagctcgac
aaacatggctatcaagctctctataagagaaaaacaaatgaggtttacaatggaaacccc
catacaatcgatggctgtgcaacatttttccgtagagatagattttcacatgtcaaaaaa
tatgaggttgaatttaataaggctgcacagtctttgactgatgctatacttccaagtgcc
cagaagaagaatgctttgaatcgattagttaaggataatgttgcattaatagtggttttg
gaagcaaaatttagtaaccagggtgctgatacacctgggaagaggcagcttctctgtgtg
gcaaatacacatgtaaacgtccaccaagagctaaaggatgttaagctgtggcaggttcat
acgctcttaaaaggattggagaaaatagctgctagtgctgacattccaatgctggtgtgt
ggggatttcaattctgttcctggaagtgctcctcatgcacttcttgccatggggaaggta
gagccagtgcatccagatttggctgtagatcctcttacgatcttgcgtcctcacactaag
ttgacacatcaacttccattggttagtgcttactcatccttcgcaagaattggagttggt
cttggcatggagcatcagaggaggagaatggaccctactaccaatgaaccgttatttaca
cattgcacaagagattttattggtaccctagattacatattttacacagcggattcttta
agcgttgaatccttgttggaactcttggatgaggatagcttgaggaaagacacagccctt
ccttctccagagtggtcctctgatcatatagcacttttagctgaattccgctgcaagcct
agagctagacgctga

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