Entry |
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Name |
(RefSeq) carbon catabolite repressor protein 4 homolog 1
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KO |
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Organism |
cit Citrus sinensis (Valencia orange)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:cit00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102615682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:cit03019]
102615682
Enzymes [BR:cit01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102615682
Messenger RNA biogenesis [BR:cit03019]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102615682
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102615682
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
6:join(19692503..19692660,19695549..19696305,19696821..19696907,19697008..19697091,19697171..19697257,19697360..19697446,19697588..19697641,19697719..19697810,19697910..19698024,19698195..19698342,19698510..19698655)
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AA seq |
604 aa
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR
KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG
NEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTY
TPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMG
HIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI
VCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKK
YEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCV
ANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKV
EPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFT
HCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKP
RARR |
NT seq |
1815 nt +upstreamnt +downstreamnt
atgctgagtgtgctgcgcgtgcaccttccgtcggatattcctattgtaggctgtgaactc
acgccgtacgtgctcttacggcgccccgataatgctgtcaccaccgaagatgtccccgag
tcggccccaattgatggtcatttcttgagatacaagtggtatcgtatacaaagtgataga
aaagttgctgtatgtagcgtacatccttctgagcaagccactcttcagtgtctaggttgt
gttaaggctaaaatacctgttgccaaaagttaccattgctcaccaaagtgcttctctgat
gcatggcagcatcatcgtgttcttcacgatcgtgctgcaagtgctgtaaatgagaatggg
aatgaagaggaggagttatttggccgtttcaatagcactggatctggagttatcaatgct
agcttatctggttctgcctcaaattctagcctgacgaatggttcaacacctttatatcct
gctgcagttacgcggagcggaggtgaaacttggtttgaagttggacgatcaaaaacatac
actccatcagccgatgatattggccatgtcctgaagtttgagtgtgtcgtagtagatgca
gaaaccaaactccccgtggggcatcccaacactctgttgacttcccgagtcattcctgcc
ccttctcctagtcctcgtcgcttgttcccggtcaatggatctgacatgaacatgatgggg
catatcgattctgatggccgtatttcaagcactggaactttttctgtgctctcatacaat
attttgtctgatgtgtacgcaacaagcgaatcatatagttactgcccttcatgggctcta
tcgtgggcatatcgcagacagaatttgttgcgggaaattattggctaccgtgctgatata
gtttgtcttcaggaggttcaaaatgatcactttgaggaattttttgcccctgagctcgac
aaacatggctatcaagctctctataagagaaaaacaaatgaggtttacaatggaaacccc
catacaatcgatggctgtgcaacatttttccgtagagatagattttcacatgtcaaaaaa
tatgaggttgaatttaataaggctgcacagtctttgactgatgctatacttccaagtgcc
cagaagaagaatgctttgaatcgattagttaaggataatgttgcattaatagtggttttg
gaagcaaaatttagtaaccagggtgctgatacacctgggaagaggcagcttctctgtgtg
gcaaatacacatgtaaacgtccaccaagagctaaaggatgttaagctgtggcaggttcat
acgctcttaaaaggattggagaaaatagctgctagtgctgacattccaatgctggtgtgt
ggggatttcaattctgttcctggaagtgctcctcatgcacttcttgccatggggaaggta
gagccagtgcatccagatttggctgtagatcctcttacgatcttgcgtcctcacactaag
ttgacacatcaacttccattggttagtgcttactcatccttcgcaagaattggagttggt
cttggcatggagcatcagaggaggagaatggaccctactaccaatgaaccgttatttaca
cattgcacaagagattttattggtaccctagattacatattttacacagcggattcttta
agcgttgaatccttgttggaactcttggatgaggatagcttgaggaaagacacagccctt
ccttctccagagtggtcctctgatcatatagcacttttagctgaattccgctgcaagcct
agagctagacgctga |