Callithrix jacchus (white-tufted-ear marmoset): 100386786
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Entry
100386786 CDS
T03264
Symbol
DDX23
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23 isoform X3
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100386786 (DDX23)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjc03041
]
100386786 (DDX23)
Enzymes [BR:
cjc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100386786 (DDX23)
Spliceosome [BR:
cjc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100386786 (DDX23)
Complex C
U5 SnRNP specific factors
100386786 (DDX23)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-GeneID:
100386786
NCBI-ProteinID:
XP_002752462
Ensembl:
ENSCJAG00000020775
UniProt:
F7IT31
LinkDB
All DBs
Position
9:67152227..67175928
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AA seq
820 aa
AA seq
DB search
MAGELADKKDRDASPSKEERKRSRTPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSR
SRSRSKSIERERRHKERERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRK
DRDSKKDEEDEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQE
VEERQKMLEEERKKRKQFQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREE
KDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLYKERHQVQLLG
RGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDDRHWSQK
KLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ
AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL
AQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVL
SRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYR
QTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILE
QGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVA
TDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELK
QAILESPVSSCPPELANHPDAQHKPGTILTKKRREETIFA
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagagctggctgacaaaaaggaccgggatgcatcaccttccaaggaggaaagg
aagcgatcacgtactcctgacagagagcgggatagagaccgggaccggaagtcttcccca
tctaaagataggaagcggcatcgttcaagggatagacgtcgaggaggcagccgttctcgc
tctcgttcccgttccaaatctatagaaagagaacgacggcacaaagaacgagaacgagat
aaggagcgggatcggaataaaaaggaccgagatcgagacaaggatgggcacagacgggac
aaggaccgtaaacgatccagcttatctcctggccgaggaaaagactttaaatctcggaag
gacagagactctaagaaggatgaagaggatgaacatggtgataagaagcctaaggcccag
ccattatccctggaggaacttctggccaagaaaaaggctgaggaagaagctgaggctaag
cccaagttcctctccaaagcagaacgagaggctgaagctctaaagcgacggcagcaggag
gtggaagagcggcagaagatgcttgaagaagagaggaagaaaaggaaacagttccaagac
ttgggcaggaagatgttggaagatcctcaggaacgggaacgtcgggaacgcagggagagg
atggagcgggagaccaatggaaatgaggatgaggaagggcggcagaagatccgggaagag
aaggataagagcaaggaactgcatgccattaaggagcgttacctgggtggcatcaaaaag
cggcgccgaacgagacatctcaatgaccgaaagtttgtttttgagtgggatgcatctgaa
gacacatccatcgactacaatcccctgtacaaagaacggcaccaggtgcagttactgggg
cgaggcttcattgcaggcattgacctcaagcagcagaaacgagagcagtcacgtttctat
ggagacctaatggagaagagacgaaccctggaagaaaaggagcaggaggaggcaagactc
cgaaaacttcgtaagaaggaagccaagcagcgctgggatgatcgtcattggtctcagaaa
aaattagatgagatgacggacagggactggcggatcttccgtgaggactacagcatcacc
accaaaggcggcaagatccccaatcccatccgatcttggaaagactcttctcttccccca
cacattttggaggtcattgataagtgtggctacaaggaaccaacacctatccagcgtcag
gcaattcccattgggctacagaatcgtgacatcattggtgtggctgagactggcagcggc
aagacagcagccttcctcatcccactgctggtgtggatcaccacacttcccaaaattgac
aggattgaagagtcagaccaaggcccttatgccatcatcctggctcccacccgtgagttg
gctcaacagattgaggaagagaccatcaagtttgggaagccgctaggcatccgcactgtg
gctgtcattggtggcatctccagagaagaccagggcttcaggctacgcatgggttgtgag
attgtgatcgctacccctgggcgtttgattgatgtgctggagaaccgctacctggtgcta
agccgatgtacctatgtggttctggatgaggcagataggatgattgacatgggctttgag
ccagatgtccagaagatcctggaacacatgcctgtcagcaaccagaagccagacacggat
gaggctgaagaccctgagaagatgctggccaactttgagtcaggaaaacataagtaccgc
caaacagtaatgttcacggctaccatgcccccggcagtggagcgtctggccaggagctat
cttcgacgacctgctgtggtgtacattggttccgcaggcaagccccatgagcgtgtggaa
cagaaggtcttcctcatgtcagagtcagaaaagaggaaaaagctgctggcaatcttggag
caaggctttgacccacccatcattatttttgtcaaccagaagaagggctgtgacgtgttg
gccaaatccctggaaaagatggggtacaatgcttgcacactgcatggtggaaaaggccag
gagcagcgagaatttgcattgtccaacctcaaggctggggccaaggatattttggtggct
acagatgtggctggtcgtggtattgacatccaagatgtgtctatggttgtcaactatgat
atggccaaaaatattgaagattatatccaccgcattggccgcacgggacgagcaggcaag
agtggggtggccatcaccttcctcacaaaagaggactctgccgtgttctacgagttgaaa
caagccatcctggaaagcccagtgtcttcctgtccccccgagctagccaaccatccagat
gcccagcataagccaggcaccatcctcaccaagaagcgccgggaagagaccatatttgcc
tga
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