Callithrix jacchus (white-tufted-ear marmoset): 100389294
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Entry
100389294 CDS
T03264
Symbol
SCN2A
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
100389294 (SCN2A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cjc04040
]
100389294 (SCN2A)
Ion channels [BR:
cjc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100389294 (SCN2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
GPHH
ATP-synt_B
IQ
IQCJ-SCHIP1
Motif
Other DBs
NCBI-GeneID:
100389294
NCBI-ProteinID:
XP_002749429
Ensembl:
ENSCJAG00000006141
UniProt:
U3FV47
LinkDB
All DBs
Position
6:complement(61007340..61174988)
Genome browser
AA seq
2005 aa
AA seq
DB search
MAQSVLVPPGPDSFRFFTRESLAAIEQRIAEEKAKRPKQERKDEDDENGPKPNSDLEAGK
SLPFIYGDIPPEMVSVPLEDLDPYYINKKTFIVLNKGKAISRFSATPALYILTPFNPIRK
LAIKILVHSLFNMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSSFEINITSFFNNSL
DGNGTTFNRTVSMFNWDEYIEDKSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAESRDFSGAGGI
GVFSESSSVASKLSSKSEKELKNRRKKKKQKEQSGEEEKSDRVRKSESEDSIRKKGFRFS
LEGSRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRASLFSFRGRTKDIGSENDFADDEHST
FEDNDSRRDSLFVPHRHGERRHSNVSQASRASRVLPILPMNGKMHSAVDCNGVVSLVGGP
STLTSAGQLLPEGTTTETEIRKRRSSSYHVSMDLLEDPTSRQRAMSIASILTNTMEELEE
SRQKCPPCWYKFANMCLIWDCCKPWLKVKHLVNLVVMDPFVDLAITICIVLNTLFMAMEH
YPMTEQFSSVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVSLSLMELGL
ANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGM
QLFGKSYKECVCKISNDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCL
TVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVGRMQKGIDFVKRK
IREFIQKAFVRKQKALDEIKPLEDLNNKKDSCISNHTTIEIGKDLNYLKDGNGTTSGIGS
SVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDMEESKEKLNATSS
SEGSTVDIGAPAEGEQPEAEPEESLEPEACFTEDCVRKFKCCQISIEEGKGKLWWNLRKT
CYKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEMLLK
WVAYGFQVYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRF
EGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINYTTGEMFDVSVV
NNYSECKALIESNQTARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVELQ
PKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNA
MKKLGSKKPQKPIPRPANKFQGMVFDFVTKQVFDISIMILICLNMVTMMVETDDQSQEMT
NILYWINLVFIVLFTGECVLKLISLRYYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFV
SPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMS
NFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPEKDHPGS
SVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYE
VWEKFDPDATQFIEFAKLSDFADALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFA
FTKRVLGESGEMDALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSAIIIQRAYRRYL
LKQKVKKVSSIYKKDKGKECDGTPIKEDTLIDKLNENSTPEKTDMTPSTTSPPSYDSVTK
PEKEKFEKDKSEKEDKGKDIRESKK
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggcacagtcagtgctggtaccgccaggacctgacagcttccgcttctttaccagggaa
tcccttgctgctattgaacaacgcattgcagaagagaaagcaaagagacccaaacaggaa
cgcaaggatgaggatgatgaaaatggcccaaagccaaacagtgacttggaagcaggaaaa
tcccttccatttatttatggagacattcctccagagatggtgtcagtgcccctggaggat
ctggacccctactatatcaataagaaaacatttatagtattgaataaagggaaagcaatc
tctcgattcagtgccacccctgccctttacattttaactcctttcaaccctattagaaaa
ttagctattaagattttggtacattctttattcaatatgctcattatgtgcactattctt
accaactgtgtatttatgaccatgagtaaccctccagactggacaaagaatgtggagtat
acctttacaggaatttatacttttgaatcacttattaaaatacttgcaaggggcttttgc
ttagaagatttcacatttctacgggatccatggaactggttggatttcacagtcattact
tttgcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagcattgaaaaccatttcagtcattccaggcctgaagaccattgtgggggcc
ctgatccagtcagtaaagaagctttctgatgtcatgatcttgactgtgttctgtctaagc
gtgtttgcgctaataggattacagttgttcatgggcaacctacgaaataaatgtttgcaa
tggcctccagataattcttcctttgaaataaatatcacttccttctttaacaactcattg
gatgggaatggtaccactttcaataggacagtgagcatgtttaactgggatgaatatatt
gaggataaaagtcacttttattttttagaagggcaaaatgatgctctgctttgtggcaac
agctcagatgcaggccagtgtcctgaaggatacatctgtgtgaaggctggtagaaacccc
aactatggctacacgagctttgacacctttagttgggcctttttgtccttatttcgtctc
atgactcaagacttctgggaaaacctttatcagctgactctacgtgctgctgggaaaacg
tacatgatattttttgtgctggtcattttcttgggctcattctacctaataaatctgatc
ctggctgtggtggccatggcctatgaggaacagaatcaggccaccttggaagaagctgag
caaaaggaagctgaatttcagcagatgcttgaacagttgaaaaagcaacaagaagaagct
caggcagcagctgcggctgcatctgctgaatcaagagacttcagtggtgctggtgggata
ggagttttctcagagagttcttcagtagcatctaagttgagctccaaaagtgaaaaggag
ctgaaaaacagaagaaagaaaaagaaacagaaagaacagtctggagaagaagagaaaagt
gacagagtccgaaaatcggaatctgaagacagcataagaaaaaaaggtttccgtttttcc
ttggaaggaagtagactgacatatgaaaagagattttcttctccacatcagtccttactg
agcatccgtggctcccttttctctccaagacgcaacagtagggcaagccttttcagcttc
agaggtcgaacaaaagatattggctctgagaatgactttgctgatgatgagcacagcacc
ttcgaggacaatgacagccgaagagactctctgtttgtgccgcacagacatggggaacgg
cgccacagcaatgtcagccaggccagccgtgcctccagagtgctccccatcctgcccatg
aacgggaagatgcatagcgctgtggactgcaacggtgtggtctccctggtcgggggtcct
tctaccctcacatctgctggacagctcctgccagagggcacaactactgaaacagaaata
agaaagagacggtccagttcttatcatgtttccatggatttgttggaagatcctacatca
agacaaagagcaatgagtatagccagtattttgaccaacaccatggaagaacttgaagaa
tccagacagaagtgcccaccatgctggtataaatttgctaatatgtgtttgatttgggat
tgttgtaaaccatggttaaaggtgaaacatcttgtcaatctggttgtgatggatccattt
gttgaccttgccatcaccatctgcattgtcttaaatacactcttcatggctatggagcac
tatcccatgacggagcagttcagcagtgtgctgtctgttgggaacctggtcttcacgggg
atcttcacagcagaaatgtttctcaagataattgccatggatccatattactactttcaa
gaaggctggaacatttttgacggttttattgtgagccttagtttaatggaacttggtttg
gcaaatgtggaaggattgtcagttctccgatcattccggctgctccgagttttcaagttg
gcaaaatcctggccaactctgaatatgctaataaagatcattggcaattctgtgggggct
ctgggaaacctcaccttggtgttggccatcatcgtcttcatttttgccgtggtcggcatg
cagctctttggtaagagctacaaagaatgtgtctgcaagatttccaatgattgtgaactc
ccacgctggcacatgcatgacttcttccactccttcctgattgtgttccgtgtactgtgt
ggagagtggatagagaccatgtgggactgtatggaggtcgctggccaaaccatgtgcctt
actgtcttcatgatggtcatggtgattggaaatctagtggttctgaacctcttcttggcc
ttgcttctgagttccttcagttctgacaatcttgctgccactgatgatgataacgaaatg
aataatctccagattgctgtgggaaggatgcagaaaggaatcgattttgttaaaagaaaa
atacgtgaatttattcaaaaagcttttgttaggaaacagaaagctttagatgaaattaaa
cctcttgaggatttaaataataaaaaagacagctgtatttccaaccataccaccatagaa
ataggcaaagacctcaattatctcaaagatggaaatggaactactagtggcataggcagc
agtgtagaaaagtatgtcgtggatgaaagtgattacatgtcatttataaacaaccctagc
ctcactgtgacagtaccaattgctgttggagaatctgactttgaaaatttaaatactgaa
gaattcagcagcgagtcagatatggaggaaagcaaagagaagctaaatgcaactagttca
tctgaaggcagcaccgttgatataggagctcccgctgagggagaacagcctgaggctgaa
cctgaggaatcccttgaacctgaagcctgttttacagaagactgtgtacgaaagttcaag
tgttgtcagataagtatagaagaaggcaaagggaaactctggtggaatttgaggaaaaca
tgctataagatagtggagcacaattggtttgaaaccttcattgtctttatgattctgctg
agcagtggggctctggcctttgaagatatatacattgagcagcgaaaaaccattaagacc
atgttagaatacgctgacaaggttttcacttacatattcatcctggaaatgctgctaaag
tgggttgcatatggttttcaagtgtattttaccaatgcctggtgctggctcgacttcctg
attgttgatgtctcattggtcagtttaactgcaaatgccttgggttactcagaacttggt
gccatcaaatccctcagaacactaagagctctgaggccactgagagccttgtcccggttt
gaaggaatgagggttgttgtaaatgctcttttaggagccattccatctatcatgaatgta
cttctggtttgtctgatcttttggctcatattcagtataatgggagtgaatctctttgct
ggcaagttttaccattgtattaactacaccactggagagatgtttgatgtaagcgtggtc
aacaactacagtgagtgcaaagctctcattgaaagcaaccaaactgccaggtggaaaaat
gtgaaagtaaactttgataacgtgggacttggatatctgtctctacttcaagttgccaca
tttaagggatggatggatattatgtatgcagctgttgactcacgaaatgtagaattacaa
cccaagtatgaagacaacctgtacatgtatctttattttgtcatttttattatttttggt
tcattctttaccttgaatcttttcattggtgtcatcatagataacttcaaccaacagaaa
aagaagtttggaggtcaagacatttttatgacagaagaacagaagaaatactacaatgca
atgaaaaaactgggttcaaagaaaccacaaaaacccatacctcgacctgctaacaaattc
caaggaatggtctttgattttgtaaccaaacaagtctttgatatcagcatcatgatcctc
atctgccttaacatggtcaccatgatggtggaaaccgacgaccagagtcaagaaatgaca
aacattctgtactggattaatctggtgttcattgttctgttcactggagagtgtgtgctg
aaactgatctctcttcgttactactatttcactattggatggaatatttttgattttgtg
gtggtcattctctccattgtaggaatgtttctagctgaactaatagaaaagtactttgtg
tcccctaccctgttccgagtgatccgtcttgcccggattggccgaatcctacgtctgatc
aaaggagcaaaggggatccgcacgctgctctttgctttgatgatgtcccttcccgcgttg
tttaacatcggcctcctgctcttcctggtcatgttcatctacgccatctttgggatgtcc
aactttgcctatgttaagagggaagttggaatcgatgacatgttcaactttgagaccttt
ggcaacagcatgatctgcctgttccaaattacaacgtctgctggctgggatggattgcta
gcccctattcttaatagtggacctccagactgtgaccctgaaaaagatcaccctggaagc
tctgttaagggagactgtgggaacccatctgttgggattttcttttttgtcagttacatc
atcatatccttcctggttgtggtgaacatgtatatcgcagtcatcctggagaacttcagt
gttgctactgaagaaagtgcagagcccctgagtgaggatgactttgagatgttctacgag
gtttgggagaagtttgatcccgatgcaacccagtttatagagttcgccaagctctctgat
tttgcagatgccctggatcctcctcttctcatagcaaaacccaacaaagtccagcttatt
gccatggatctgcccatggtcagtggtgaccggatccactgtcttgacatcttatttgct
tttacaaagcgtgttctgggtgagagtggagagatggatgcccttcgaatacagatggaa
gagcgattcatggcatcaaacccctccaaagtctcttatgagcccattacaaccacgttg
aaacgcaaacaagaggaggtgtctgctattattatacagagggcttatagacgctacctc
ctgaagcaaaaagttaaaaaggtatcaagtatatacaagaaagacaaaggaaaagaatgt
gatggaacacctattaaagaagatacactcattgataaactgaatgaaaattcaactccg
gagaaaaccgatatgacgccttccaccacttctccaccctcgtatgatagtgtaaccaaa
ccggaaaaagaaaaatttgaaaaagacaaatcagaaaaggaagacaaagggaaagatatc
agggaaagtaaaaagtaa
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integrated database retrieval system
