KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100393328Help
Entry
100393328         CDS       T03264                                 

Gene name
CPSF6
Definition
(RefSeq) cleavage and polyadenylation specific factor 6
  KO
K14398  cleavage and polyadenylation specificity factor subunit 6/7
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100393328 (CPSF6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjc03019]
    100393328 (CPSF6)
Messenger RNA biogenesis [BR:cjc03019]
 Eukaryotic Type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor Im (CFIm)
     100393328 (CPSF6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: RRM_1 PRP38_assoc
Motif
Other DBs
NCBI-GeneID: 100393328
NCBI-ProteinID: XP_003733846
Ensembl: ENSCJAG00000001798
UniProt: F7GHX5
LinkDB All DBs
Position
9
AA seq 551 aa AA seqDB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNR
NRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGI
ESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDR
ERDREREYRHR
NT seq 1656 nt NT seq  +upstreamnt  +downstreamnt
atggcggacggcgtggaccacatagacatttacgcggatgtgggtgaagagttcaaccag
gaagctgaatatggtgggcatgatcagatagatttgtatgacgatgtcatatctccatct
gcaaataatggagatgccccagaagaccgggattacatggatactctcccaccaactgtt
ggtgatgatgtgggtaaaggagcggcaccaaatgttgtctatacgtatactggaaagaga
attgcattatatattggaaatctaacatggtggacgacagatgaagacttaactgaagca
gttcattctttgggagtaaatgatattttggagataaaattttttgaaaatcgggcaaat
ggccagtcaaaggggtttgcccttgttggtgttggatctgaagcatcttcaaaaaagtta
atggatctgttgcctaaaagagaacttcatggtcagaatcctgttgtaactccatgcaat
aaacagttcctgagtcaatttgaaatgcagtccaggaaaactacacaatcaggacaaatg
tctggggaaggtaaagctggtcctccaggagggagttctcgtgcagcatttccacaaggt
ggtagaggacggggccgttttccaggggctgttcctggtggggacagatttcctgggcca
gcaggaccaggagggccacccccaccttttccagctggacagactccaccacgtccaccc
ttaggtcctccaggcccacctggtccaccaggtcctccacctcctggtcaggttctgcct
cctcctctagctgggcctcctaatcgaggagatcgccctccaccaccagttctttttcct
ggacagccttttgggcagcctccattgggtccgcttcctcctggccctccacctccagtt
ccaggctacggcccccctcctggcccaccacctccacaacagggaccacctccacctcca
ggcccctttccacctcgtccacctggtccgcttgggccaccccttacactagctcctcct
ccgcatcttcctggaccacctccaggtgccccaccgccagctccgcatgtgaacccagct
ttctttcctccaccaactaacagtggcatgcctacatcagatagccgaggtccaccacca
acagacccatatggccgacctccaccatatgataggggtgactatggcccccctggaagg
gaaatggatactgcgagaacgccattgagtgaagctgagtttgaagaaatcatgaataga
aacagggcaatctcaagtagtgctatttcgagagctgtgtctgatgccagtgctggtgat
tatggaagtgctattgagacattggtaactgcaatttctttaattaagcaatccaaagta
tctgcagatgatcgttgcaaagttcttattagttctttgcaagattgccttcatggaatt
gagtccaagtcttacggttctggatcaagacgtgaacgatcaagagagagggaccatagt
agatcacgagaaaagagtcggcgccataaatcccgtagtagagaccgtcatgatgattat
tatagagagagaagcagagaacgagagaggcacagggatcgggaccgagaccgtgaccga
gagcgtgaccgagagcgcgagtatcgtcatcgttag

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