Callithrix jacchus (white-tufted-ear marmoset): 100395600
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Entry
100395600 CDS
T03264
Gene name
SHH
Definition
(RefSeq) sonic hedgehog
KO
K11988
sonic hedgehog
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04340
Hedgehog signaling pathway
cjc04360
Axon guidance
cjc05200
Pathways in cancer
cjc05205
Proteoglycans in cancer
cjc05217
Basal cell carcinoma
cjc05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
100395600 (SHH)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
100395600 (SHH)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100395600 (SHH)
05205 Proteoglycans in cancer
100395600 (SHH)
09162 Cancer: specific types
05226 Gastric cancer
100395600 (SHH)
05217 Basal cell carcinoma
100395600 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cjc01002
]
100395600 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100395600 (SHH)
Peptidases and inhibitors [BR:
cjc01002
]
Cysteine peptidases
Family C46: hedgehog family
100395600 (SHH)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Morphogens
100395600 (SHH)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Vint
Motif
Other DBs
NCBI-GeneID:
100395600
NCBI-ProteinID:
XP_002807093
LinkDB
All DBs
Position
8
AA seq
477 aa
AA seq
DB search
MGEMLLPARCLLLVVVSSLLVCSGLACGPGRGFGKRRHPKKLTPLSYKQFIPNVAEKTLG
ASGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLRPGDRVLAADDQGRLLYSD
FLTFLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSAAGESESSSGVGPPPGD
ALGRRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLLEEATGAYAPLTVQGTSFIH
SGVAFMVWVIEEHSWAHRAFRALRLAHALLAALAPARTDRGGDRGGVGGVDGGVGGDGGG
GGGGGGRVPPPAPGAADDPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAAKSS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagatgctgctgccggcgagatgtctgctgctagtcgtcgtctcctcgctgctg
gtgtgctccgggctggcgtgcggacccggcagggggttcggaaagaggcggcaccccaaa
aagctgacccctttatcctacaagcagtttatccccaacgtggccgagaagaccctcggc
gccagcggaaggtatgaagggaagatctccagaaactcggagcgatttaaggaactcacc
cccaattacaaccccgacattatatttaaggatgaggaaaacaccggagcggacaggctg
atgactcagaggtgtaaggacaagttgaacgccttggccatctcggtgatgaaccagtgg
ccaggagtgaaactgcgggtgaccgagggctgggacgaggatggccaccactcagaggag
tctctgcactacgagggccgcgcagtggacattaccacgtccgaccgcgaccgcagcaag
tacggcatgctggcccgcctggcggtggaggccggcttcgactgggtgtactacgagtcc
aaggcgcacatccactgctcggtgaaagcagagaactcggtggcggccaaatcggggggc
tgcttcccgggctcggccacggtgcacctggagcagggcggcaccaagctggtgaaggac
ctccgccccggagaccgcgtgctggcggcggacgaccagggccggctgctctacagcgac
ttcctcactttcctggaccgcgacgacggcgccaagaaggtcttctacgtgatcgagacg
cgggagccgcgcgagcgcctgctgctcaccgccgcgcacctgctcttcgtggcgccgcac
aatgactcggccgctggggagtccgagtcgtcctcaggcgtggggccgcctcccggggac
gcgctggggcgccgggcgctatttgccagccgcgtgcgcccgggccagcgcgtatacgtg
gtggccgagcgcgatggggaccgccggctcctgcctgccgcggtgcacagcgtgaccctg
ctcgaggaggccacgggcgcctacgcgccgctcacggtccagggcacctccttcatccac
tcgggtgtggccttcatggtatgggtcatcgaagagcacagctgggcgcaccgggctttt
cgtgcccttcgcctggcgcacgcgctcctggctgcactggcgcccgcgcgcacggaccgc
ggcggagaccgcggcggcgtgggcggagtggacggcggggtcggcggggacggcgggggc
ggcggcggcggcggcggccgagttcccccgcccgcgccaggtgcggcagacgatccgggc
gcgggggccaccgcgggcatccactggtactcgcagctgctctaccaaataggcacgtgg
ctcctggacagcgaggccctgcaccccctgggcatggcggccaagtccagctga
DBGET
integrated database retrieval system
