Callithrix jacchus (white-tufted-ear marmoset): 100400000
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Entry
100400000 CDS
T03264
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X3
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjc03000
]
100400000 (RC3H1)
04121 Ubiquitin system [BR:
cjc04121
]
100400000 (RC3H1)
Transcription factors [BR:
cjc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
100400000 (RC3H1)
Ubiquitin system [BR:
cjc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100400000 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
100400000
NCBI-ProteinID:
XP_002760397
Ensembl:
ENSCJAG00000009106
LinkDB
All DBs
Position
18:22613469..22674725
Genome browser
AA seq
1124 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSATILPDE
GAVDLPNRKPPALPNGIVSAGNTVTQLIPRGTDPSYDSSLKPGKVDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPIPPRGPTDLPPMPVTKPLQMVPRGSQLYPAQQTDVYYQDPRGAA
PPFEPAPYQQGMYYTPPPQCVSRFVRPPPSAPEPAPPYLDHYPPYLQDRVVNSQYGTQPQ
QYPPIYPSHYDGRRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQQIESYYP
VAPHPTQIRASYLREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPTFHPEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MNVESKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAVA
PQGAPTKPINISDYSPYGTHSGWGGSPYSPHQNIPSQGHFSERERISMSEVASHGKPLPS
AEREQLRLELQQLNHQISQQTQLRGLEREANALAGQSQPPPPQPPKWPGMISSEQLSLEL
HQVEREIGKRTRELSMENQCSLDMKSKLNASKQAENGQPEPQNKVPAEDLTLTFSDVPNG
SALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTPSSAP
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctctcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgagcttctccctgtgaactcagcattgctgcagctcgtgggtgctcaggtccctgag
cagcagcccattactttgtgtagtggggtggaagacacaaagcattatgaggaagccaag
aaatgtgtagaggaattagcattgtacttaaaaccactcagcagtgctagaggagtgggt
ctgaacagcactactcagagtgttctgagtcgcccaatgcagaggaagcttgtgactctg
gtccactgtcaactagtagaagaagaaggcaggattcgtgccatgagggcagctcgatct
ttaggtgaacgaacagttacagagctcattctccagcaccagaatcctcagcagctctcc
tccaatctttgggcagcagtaagggctaggggctgccagttccttggaccagcaatgcag
gaggaagctttaaagctggttctgctggccttagaagacggttctgctttgtcaagaaaa
gtattggttctctttgtggtgcaaaggttggagccacggtttcctcaagcctctaaaact
agcattgggcatgttgttcagctcctttatagagcctcctgtttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctgaaagaagaatttagaacttatgaagctctgcgg
cgagaacatgactcccagatagtgcagattgctatggaagcaggcttacgaattgcacca
gaccaatggtcctctttgctttatggagaccagtctcataaatctcacatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacagagcgttcaggaactaacaattgct
ctccagcggactggagacccagcaaacttgaaccgactaagaccccatttggagctgtta
gcaaacattgaccctagtccagatgctcctcctcctacgtgggaacagctggaaaatggg
ctggttgctgtgcgtacagtggtacatggactggttgattatatccagaaccacagcaaa
aaaggagcagatcagcagcagcctccacagcatagcaaatacaaaacatacatgtgtcga
gatatgaagcagagaggaggatgccctcgtggggccagctgtacgtttgcacactcacag
gaggaactggaaaaatttcgcaaaatgaacaagcgcctggttccaagaagacccttgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcagcaactatccttccagatgaa
ggtgcagtggatctccctaacagaaaacctcctgctctgccaaatggaattgtatcagca
gggaatacagtaacacagcttattccacgagggacagaccccagctatgattctagtctg
aaaccaggaaaagtagatcatctgagcagtagtgctcctggatctcctcctgacctgcta
gaatctgtccctaagagtatttctgccttacctgtgaatccacatcctatacctccaagg
ggcccaacagatctgcctccaatgcctgtcaccaaaccgcttcagatggtacctcgaggt
tcgcagttatatccagcacaacagacagatgtttattatcaggatcctcgaggagcggct
ccaccatttgaaccagcaccttatcagcagggtatgtattatactccaccaccacaatgt
gtgtcccgctttgtcagacctccaccatctgctcctgaacctgctcctccctacttggat
cattatccaccttacctccaagatcgtgttgtaaactctcagtatggcacacagccacag
cagtacccacctatatacccatctcactatgatggccgtcgagtgtaccctgctcagtct
tatacgagagaagagatattccgagaaagccctatacccattgagattccacctgcagca
gtaccatcctacgtaccagagtccagagaaagataccagcagatcgagagttactatcca
gtggctcctcatccaactcagatcagagcttcgtacctcagagaacctccttatagccgg
cttcctcctcctccccagcctcatcctagtctagatgaattacatcgccgacgaaaggaa
ataatggcccagctagaagaaagaaaggttatctctccacctccttttgcaccttcacca
accttgcctcctacctttcatccagaagaatttttggatgaagacttgaaggtagctggg
aaatacaaaggaaatgattatagccagtactctccctggtcatgtgacaccatcggctcc
tacattggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatg
atgaatgtggagagtaaaggaatgagggaccaacgattagatcttcagagaagagcagca
gaaaccagtgatgatgacctcatcccgtttggagaccgaccaacagtgtctcggtttggt
gccatctcacgaacttccaaaactatatatcagggtgctggtccaatgcaggctgtggca
cctcagggagctcctacaaagcctattaacatttcagattatagtccatatggaacccac
agtggctggggaggttctccatattcacctcatcaaaacataccttctcagggacacttc
agtgagagggagagaatatctatgtcagaagtggccagtcatggaaaaccccttccatct
gctgagagagaacagctacgactagaattgcagcaattgaaccatcagattagccagcag
acccagctacgtggactagagagggaggcaaacgccctggcaggccagtcacagcctccg
ccaccacaacccccaaaatggcctggaatgatctcaagtgagcagttgagcttggaactg
caccaggtggaaagggaaatcgggaagagaacacgagaactgagtatggaaaaccagtgt
tctctggacatgaaaagcaaattgaatgcaagtaaacaagcagaaaatggacaaccagaa
ccacaaaacaaggttccggctgaggaccttacattgacattcagtgatgtaccaaatgga
tcagccttgacgcaagagaatatcagcctcctatcaaacaagaccagctctctgaacctg
tcagaggatcctgagggaggaggggataataatgactcccagagatcaggagttactccc
agttctgctccttaa
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integrated database retrieval system
