Callithrix jacchus (white-tufted-ear marmoset): 100400927
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Entry
100400927 CDS
T03264
Symbol
PCDH15
Name
(RefSeq) protocadherin-15 isoform X3
KO
K16500
protocadherin-15
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cjc03037
]
100400927 (PCDH15)
04515 Cell adhesion molecules [BR:
cjc04515
]
100400927 (PCDH15)
Cilium and associated proteins [BR:
cjc03037
]
Primary cilia and associated proteins
USH complex and associated proteins
100400927 (PCDH15)
Cell adhesion molecules [BR:
cjc04515
]
Cadherins
Protocadherins
100400927 (PCDH15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
ECD
Cadherin_3
CshA_repeat
Mito_fiss_reg
Motif
Other DBs
NCBI-GeneID:
100400927
NCBI-ProteinID:
XP_035124270
LinkDB
All DBs
Position
12:71229772..73129373
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AA seq
1677 aa
AA seq
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MFQQFYLWTCLASGIILGTLFEICLGQYDDDWQYEDCKLARGGPPATIVAIDEESRNGTI
LVDNMLIKGTAGGPDPTIELSLKDNVDYWVLMDPVKQMLFLNSTGRVLDRDPPMNIHSIV
VQVQCINKKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNG
ATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTSYFVIIQAN
DRAQNLNERRTTTTTLTVDVLDGDDLGPVFLPCVLVPNTRDCRPLTYQAAIPELRTPEEL
NPITVTPPIEAIDQDRNIQPPSDRPGILYSILVGTPEDYPRFFHMHPRTAELSLLEPVNR
DFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPSYQGYILESAPVGATIS
DSPNLTSPLRIVALDKDVEDTKDPELHLFLNDYTSVFTVTQTGITRYLTLLQPVDREEQQ
TYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYVYTDMRPGDSVIQLTAVD
ADEGSNGEITYEILVGAQGDFIINKTTGLITIAPGVEMIVGQTYALTVQASDNAPPAERR
HSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLLNLQATDREGDSVTYTIENG
DPQRVFNLSETTGILTLGKALDRESTDRYILIITASDGRPDGTSTATVNVVVTDVNDNAP
VFDPYLPRNLSVVEEEANAFVGQVKATDPDAGINGQVHYSLANFNNLFRITSNGSIYTAV
KLNREVRDYYELVVVATDGAVHPRHSTITLAIKVLDIDDNSPVFTNSTYTVLVEENLPAG
TTFLQIEAKDVDLGANVSYRIRSPEVKHLFALHPFTGELSLLRSLDYEAFPDQEASITFL
VEAFDIYGTMPPGIATVTVIVKDMNDYPPVFSKRIYKGMVAPDAVKGTPITTVYAEDADP
PGLPASRVRYRVDDVQFPYPASIFDVEEDSGRVITRVNLNEEPTTIFKLVVVAFDDGEPV
MSSSATVKILVLHPGEIPRFTQEEYRPPPVSELASKGTVVGVISAAAVNQSIVYSIVSGN
EEDKFGINNITGVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQ
DENNNPPVFQKKFYIGGVSEDARMFTSVLRVKATDKDTGNYSVMAYRLIIPPIKEGKEGF
VVETYTGLIKTAMLFHNMRRSYFKFQVIATDNYGKGLSGKADVLVSVVNQLDMQVIVSNV
PPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDYTKCDLTVYAIDP
QTNRAIDRKELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEG
ALLALAFIIILCCIPAILVVLVSYRQRQAECTKTARIQAALPAAKPAAPAPAPVAAPPPP
PPPPPGAHLYEELGDSSMYEMPQYGSRRRLLPPAGQEEYGEMVGEAEEEYEEEEWARKRM
IKLVVDREYESSSTGEDSAPECQRNRLHHSNIHSNINGNIYIAQNGSVVRTRRACLTDNL
KVASPVRLGRHFKKVDKLAVTHEENVPLNTLSKGPFSTEKMNARPTLVTFAPCPVGTDNT
VVKPMGNRLKSTVEQESMIDSKNIKEALEFHSDHTQSDDEELWMGPWNNLHIPMTKL
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacagttttatctctggacatgtttagcttcagggatcatcctgggcactctc
tttgaaatctgcttgggccagtacgatgatgactggcaatatgaggattgcaaactagct
aggggaggaccaccagctactatagttgctattgatgaggagagtcggaatggtacaatt
ctggtggacaacatgctgatcaaagggactgctggaggaccagaccccaccatagaactt
tctttaaaggacaatgtggattactgggtgttgatggatcctgttaagcaaatgctcttc
ctgaacagcactggcagagttctggatagagatccaccgatgaacatacactccattgtg
gtgcaggtccagtgcatcaacaaaaaagtgggcactattatctaccatgaggtgcgaata
gtagtgagagacaggaatgacaactcgcccacgttcaagcatgaaagctactatgccaca
gtaaacgagctcactccagttggtaccacaatattcacaggattttcaggagacaatgga
gctacagatatagatgatggaccaaatggacagatagagtatgttattcagtataatcca
gatgatccgacatccaatgacacctttgaaattcccctaatgttgactggaaatgtagtg
ttacggaagaggctcaactatgaagacaagactagctactttgtcataatccaagctaat
gaccgtgcccaaaatctgaatgagaggcgaaccacaaccaccacgctcacagtggatgtt
ctggatggagatgacttgggtccagtgtttcttccttgtgtccttgtgccaaacactcgt
gattgccgtccactcacttaccaagctgccatacctgagttgagaactccggaagaactg
aaccccattactgttacgccaccgatagaagccattgatcaggaccggaatattcaaccg
ccatcagataggccaggaatcctctattctatccttgtcgggactcctgaggattaccca
agatttttccatatgcatcctaggacagcagaacttagtctcctggagccagtaaacaga
gactttcaccagaaatttgatttggttattaaggctgaacaagacaatggtcatcctctt
cccgcctttgccagtctacacattgaaatactggatgaaaacaatcaaagcccatatttt
acaatgcccagttatcaaggctatattctggaatctgccccagtgggagcaaccatttcg
gacagtcccaatttgacctctcctttaagaatagtagctctggacaaggacgtagaagat
acaaaagacccagagcttcacctttttctgaatgactacacctcagtcttcactgtcaca
cagactggtattactcgctacctcaccttacttcaaccagtggatagggaagaacagcaa
acttacaccttttcgataacagcatttgatggtgtacaagaaagtgagccagtcattgtc
aatattcaagtgatggatgcaaatgataacacgccaaccttccctgaaatatcctatgat
gtgtatgtttatacagacatgagacctggagacagtgtcatacagctcactgcagtcgac
gcagacgaagggtcaaatggggagatcacatatgaaatccttgttggggctcagggagac
ttcatcatcaataaaacaacagggcttatcaccatcgctccaggggtggaaatgatagtc
gggcagacttacgcactcactgtccaagcatcggataatgctcctcctgcagagagaagg
cactccatctgcactgtgtacattgaagtgcttccaccaaataatcaaagccctcctcgc
ttcccacagctgatgtatagccttgaaattagtgaagccatgagggttggtgctgtttta
ttaaatctacaggcaactgatcgagaaggagactcagtaacatataccattgagaatgga
gatcctcagagagtttttaatctttcagaaaccacggggattctaaccttagggaaagca
ctggacagggaaagcactgatcgctacattctgatcatcacagcttcagatggcaggcca
gatgggacctcaactgccacagtaaacgtggtggtgacggatgtcaatgacaatgctcca
gtgtttgatccttatctgccgagaaatttatctgtggtggaggaagaagccaatgccttt
gtgggtcaagtaaaagcaacagaccctgatgctggaataaatggtcaagtgcactacagt
ttggctaactttaataatctttttcgtatcacatccaatgggagcatttacacagcagtg
aagcttaacagagaagtcagggactactatgaacttgttgttgtggcaacagatggagca
gtgcaccctcgtcattcaacaataacactggccattaaggttttggacattgatgataat
agtcctgtgttcaccaattcaacatacactgtccttgttgaagagaatctgccggctggg
accacctttcttcaaatagaggccaaggatgtcgacctcggagcaaatgtgtcttaccgg
ataagaagcccagaagtgaagcacctttttgcactacatccatttacaggagaattatcc
cttttaaggagtttagattatgaggcatttccagaccaggaagcaagtatcacttttctg
gtagaggcctttgatatttatggaacaatgccacctggtattgctactgtcacagtgatt
gtaaaggatatgaatgattatcctcctgtatttagtaaaagaatatacaaaggcatggtg
gctccagatgcagtcaagggtacacctatcacaacagtttatgccgaagatgcagaccct
cctggattacctgcaagtcgtgtgaggtatagagtagatgatgttcagtttccttatcct
gccagtatttttgatgtggaagaagattctggaagagtaataacacgagtcaatcttaat
gaagaacctacaacaatttttaagttggtggtggttgcttttgatgatggggagcctgtg
atgtccagcagtgccacagtgaagattcttgtcttacatcctggtgagatcccacgcttc
acacaggaggaatacagacctccacccgtaagtgaacttgcctccaaagggactgtggtt
ggtgttatttctgctgctgccgttaatcaaagtattgtatactccattgtttcaggaaat
gaagaagataaatttggaattaataacatcacaggtgttatctatgtgaatggacctctg
gattatgagactaggacaagctatgtacttcgagtccaagctgattccctggaagtggtc
cttgccaatctccgagttccttcaaaaagcaatacagctaaagtgtacattgagattcag
gatgaaaataataatcccccagtgtttcagaaaaaattctacatcggaggtgtatctgaa
gatgcaagaatgtttacttctgtactcagagtgaaggctactgataaagatactggcaat
tatagtgtcatggcatacagactcataataccaccaattaaagagggaaaagaaggattt
gtagtggaaacatacacagggcttatcaaaactgcgatgctctttcataatatgaggaga
tcctacttcaagtttcaagttattgcaactgacaactatgggaaaggactaagcggcaaa
gccgatgtacttgtctctgtggtcaatcagctggatatgcaagtcattgtttccaacgtg
cctcctactctagtggaaaaaaagatagaagatcttacagagatcttggatcgctatgtt
caggaacagattcctggtgccaaggtcgtagtagagtccattggagctcgccggcatggg
gatgccttttccctagaagattataccaaatgtgacttgactgtctatgcaatcgacccc
caaaccaacagagccatcgatagaaaagagcttttcaaatttttggatggcaaactgctt
gatatcaataaagactttcagccatattatggggaaggaggacgcattctggagatccgg
actccagaggcagtgaccagcattaaaaagagaggagagagtctaggatatacagaaggg
gccttgctggctctggccttcatcatcatcctctgctgcattcctgccatcttggtggtt
ttggtcagctacagacaacgtcaagctgagtgcacaaagactgcacgaattcaggccgca
ttacccgcggctaaaccagcagcgccggcccctgcaccagtagcagcgcccccgccgcca
ccgccgcctccgccgggtgcgcatctctatgaagaacttggagacagctcaatgtatgaa
atgcctcaatatgggagtcgccgtcgattgttaccgccggctggacaggaggaatatggt
gagatggttggcgaagctgaggaagaatatgaggaggaagagtgggcaagaaaaagaatg
atcaagttagttgttgatcgagagtatgaaagcagctccactggagaagacagcgctcct
gaatgtcagagaaaccgtcttcaccattccaatatccacagtaatatcaatggcaatata
tatattgcacagaatggttctgtggtgagaacccgccgtgcctgtctcacagacaactta
aaagttgcttcccctgttcgattgggaaggcactttaagaaagtagacaaattggcagtg
acacatgaggagaatgtgcctctgaacacattatcaaaggggccattttctactgagaaa
atgaatgcaaggccaactctggttacatttgccccttgccctgtggggactgacaataca
gtggtgaagccaatgggcaacaggctgaaaagcacagttgaacaggagtccatgattgac
agtaagaacatcaaggaggctttggaatttcatagtgatcacacacagtcggatgatgaa
gagctttggatgggcccctggaacaaccttcatataccaatgacaaaactgtga
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integrated database retrieval system
