KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100408168
Entry
100408168         CDS       T03264                                 

Gene name
VIM
Definition
(RefSeq) vimentin
  KO
K07606  vimentin
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc05169  Epstein-Barr virus infection
cjc05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    100408168 (VIM)
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    100408168 (VIM)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjc03019]
    100408168 (VIM)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:cjc04812]
    100408168 (VIM)
   04147 Exosome [BR:cjc04147]
    100408168 (VIM)
Messenger RNA biogenesis [BR:cjc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     100408168 (VIM)
Cytoskeleton proteins [BR:cjc04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     100408168 (VIM)
Exosome [BR:cjc04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   100408168 (VIM)
  Exosomal proteins of other cancer cells
   100408168 (VIM)
SSDB
Motif
Pfam: Filament Filament_head DUF4515 HALZ DUF1664 TPR_MLP1_2 DUF573 MdcG Jnk-SapK_ap_N CENP-F_leu_zip Baculo_PEP_C Golgin_A5 GAS
Other DBs
NCBI-GeneID: 100408168
NCBI-ProteinID: XP_002750115
Ensembl: ENSCJAG00000008688
UniProt: F7BQY8
LinkDB
Position
7
AA seq 466 aa
MSTRSVSSSSYRRMFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGV
YATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDK
VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE
DIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKIHEE
EIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSE
AANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQD
TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSS
LNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq 1401 nt   +upstreamnt  +downstreamnt
atgtccaccaggtccgtgtcttcgtcctcctaccgcaggatgttcggcggcccgggcacc
gcgagccggccgagctccagccggagctacgtgaccacgtccacccgcacctacagcctg
ggcagcgcgctgcgccccagcaccagccgcagcctctacgcctcgtctccgggcggcgtg
tatgccacgcgctcctcggcagtgcgcctgcggagcagcgttcccggggtgcgactgctg
caggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgc
accaacgagaaggtggagctgcaggagctgaatgaccgcttcgcaaactacatcgacaag
gtgcgcttcctggagcagcagaataagatcctgctggccgagctcgagcagcttaagggc
cagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccgacag
gtggaccagctcaccaacgacaaagcccgagtcgaggtggagcgcgacaacctggccgaa
gacatcatgcgcctccgggaaaaattgcaggaggagatgcttcagagagaggaagccgag
agcaccctgcaatctttcagacaggatgttgacaatgcgtctctggcacgtcttgacctt
gaacgcaaagtggaatccttgcaagaagagattgcctttttgaagaaaatacacgaagag
gaaatccaggagctgcaggctcagattcaggaacagcatgtccagatcgatgtggacgtt
tccaagccggacctcacggctgccctgcgtgacgtacgtcagcagtatgaaagtgtggct
gccaagaacctgcaggaggcagaagaatggtacaagtctaagtttgctgacctctccgag
gctgccaaccgaaacaatgatgccctacgccaggcaaagcaggagtccaatgagtaccgg
agacaggtgcagtccctcacctgtgaagtggatgctcttaaaggaaccaacgagtccctg
gaacgccagatgcgtgaaatggaagagaactttgccgtcgaagctgctaactaccaagac
actattggccgcctgcaggatgagattcagaacatgaaggaggaaatggctcgtcacctt
cgtgaataccaagacctgctcaatgttaagatggcccttgacattgagattgccacctac
aggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaacttttcctcc
ctgaacctgagggaaactaatctggattcactccctctggttgacacacactcaaaaagg
acacttctgattaagacggttgaaactagagatggacaggttatcaacgaaacttctcag
catcatgatgaccttgaataa

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