Callithrix jacchus (white-tufted-ear marmoset): 100408892
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Entry
100408892 CDS
T03264
Symbol
TRPC4
Name
(RefSeq) short transient receptor potential channel 4 isoform X1
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04360
Axon guidance
cjc04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
100408892 (TRPC4)
09158 Development and regeneration
04360 Axon guidance
100408892 (TRPC4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cjc04040
]
100408892 (TRPC4)
Ion channels [BR:
cjc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100408892 (TRPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank_4
Ank
Ank_3
PKD_channel
Motif
Other DBs
NCBI-GeneID:
100408892
NCBI-ProteinID:
XP_002749029
Ensembl:
ENSCJAG00000017909
UniProt:
A0A5K1VJC0
LinkDB
All DBs
Position
5:complement(152884628..153083843)
Genome browser
AA seq
977 aa
AA seq
DB search
MAQFYYKRNVNAPYRDRIPLRIVRAESELSPSEKAYLNAVEKGDYASVKKSLEEAEIYFK
ININCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIAPKSPLGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIDRSDLNRQGPPPTIVEWMILPWVLGFIWGEIKQ
MWDGGLQDYIHDWWNLMDFVMNSLYLATISLKIVAFVKYSALNPRESWDMWHPTLVAEAL
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVGATM
FGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNVI
PSPKSLWYLIKWIWTHLCKKKMRRKPESFGTIGRRAADNLRRHHQYQEVMRNLVKRYVAA
MIRDAKTEEGLTEENFKELKQDISSFRFEVLGLLRGSKLSTIQSANASKESSNSADSDEK
SDNEGNSKDKKKNFSLFDLTTLIHPRSAAIASERHNISNGSALVVQEPHREKQRKVNFVT
DIKNFGLFHRRSKQNAAEQNANQIFSVSEEVARQQAAGPLERNIQLESRGLASRGDLSIP
GLSEQCVLVDHRERNTDTLGLQVGKRVCPFKSEKVVVEDTVPIIPKEKHAKEEDSSVDSD
LNLPDTVTHEDYVTTRL
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggctcaattctattacaaaagaaatgttaatgctccctatagagatcgcattccacta
aggatagtaagagcagaatccgaactctcaccatcagagaaagcctacttgaatgctgtg
gaaaagggagattatgccagtgtcaagaaatcgctagaggaagctgaaatttattttaaa
atcaatattaattgcattgatcctctcggaagaactgctctcctcattgccattgaaaat
gagaacttggagctcatcgaactactcttgagcttcaatgtgtatgttggagatgctctg
ttacatgctatcagaaaagaagtcgtcggagctgttgagctgttgttgaaccacaaaaaa
cctagtggagaaaaacaggtgcctcctatactccttgataagcagttctctgaattcact
ccagacattacaccaatcattttggcagcccatacaaataattatgagataataaaactc
ttggttcagaaaggggtctcagtgcctcgaccccatgaagtccgctgtaactgtgtggaa
tgtgtgtccagttcagatgtggacagcctccgtcactcacgctccagactcaacatctac
aaggccttggccagcccctctctcattgcactgtcaagtgaagatccttttctcacagcc
tttcagttaagctgggagctgcaggaactgagcaaggtggaaaatgaattcaagtcagag
tatgaagagctgtcacggcagtgcaaacaatttgctaaggacctactggatcagacgaga
agttccagagaactggaaatcattcttaattaccgagatgacaatagtctgatagaagaa
caaagtggaaatgatcttgcaagactaaaattggccattaaataccgtcaaaaagagttt
gttgcccagcccaattgtcaacaactgctggcatctcgctggtacgatgagtttccaggc
tggaggagaagacactgggcagtgaagatggtgacatgtttcatcatcggactgcttttt
cccgtcttctctgtgtgctacctgatagctcccaaaagcccactgggactgttcatcaga
aagccatttatcaagtttatctgccacacagcctcctatctgacttttttgttcctgctg
ctgcttgcctctcagcacatcgacaggtcagacttgaacaggcaaggtccaccaccaacc
atcgtcgagtggatgatattaccgtgggtcctgggtttcatatggggagaaattaaacag
atgtgggatggcggacttcaggattacatccatgattggtggaatctaatggactttgta
atgaactccttatatttagcaacaatctccttgaaaatcgttgcatttgtaaagtacagt
gcccttaatccacgagaatcatgggacatgtggcatcccactctggtggcagaggcttta
tttgctattgcaaacatcttcagttctctgcgtctgatctcattgtttactgcaaattct
cacctgggacctctgcaaatatctctgggaagaatgctcctggacattttgaagtttcta
ttcatatactgccttgtgttgctagcatttgcaaatggcctgaatcagttgtacttctat
tatgaagaaaccaaagggttaacctgcaaaggcatacgatgtgaaaagcagaacaatgca
ttttcgacgttatttgagacactccagtccctgttttggtcaatatttgggctcatcaat
ttatatgtgaccaatgttaaagcacagcatgaatttactgagtttgttggtgccaccatg
tttgggacatataatgtcatctctctggttgttctactcaacatgttaatagctatgatg
aataattcttaccaactgattgctgaccatgcagatatagaatggaaatttgcacgaaca
aagctttggatgagttattttgaagaaggaggtaccctgcctactcccttcaatgtcatc
ccaagccccaagtctctctggtacctgatcaaatggatctggacacacttgtgcaagaaa
aagatgagaagaaagccagaaagttttggaacaatagggaggcgagctgctgataattta
agaagacatcaccaataccaagaagttatgaggaacctcgtgaagcgctacgttgctgca
atgattagagatgctaaaactgaagaaggcctgaccgaagagaactttaaggaactaaag
caagacatttccagtttccgctttgaagttctgggattactaagaggaagcaaactttcc
acgatacaatctgcaaatgcctcgaaggagtcttcaaattcggcagactcagatgaaaag
agtgataacgaaggtaatagcaaggacaagaaaaagaatttcagcctttttgatttaacc
accctgattcatccgagatcagcagcaattgcctctgaaagacataacataagcaatggc
tctgccctggtggtgcaggagccacacagggagaagcagagaaaagtgaattttgtgacc
gatatcaaaaactttggtttatttcatagacgatcaaaacaaaatgctgctgagcaaaat
gcaaaccaaatcttctctgtttcagaagaagttgctcgccaacaggctgcaggaccactt
gagagaaatattcaactggaatctcgaggattagcttcacggggtgacctgagcattcct
ggtctcagtgaacagtgtgtgttagtagaccatagagaaaggaatacggacacactgggg
ttacaggtaggcaagagagtgtgtcctttcaagtcagagaaggtggtggtggaggacacg
gttcctataataccaaaggagaaacatgcaaaagaagaggactctagtgtagactctgat
ctaaacctcccggacacagtcacccacgaagattatgtgacaacaagattgtga
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