Callithrix jacchus (white-tufted-ear marmoset): 100410387
Help
Entry
100410387 CDS
T03264
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04024
cAMP signaling pathway
cjc04340
Hedgehog signaling pathway
cjc04360
Axon guidance
cjc05200
Pathways in cancer
cjc05205
Proteoglycans in cancer
cjc05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
100410387 (PTCH1)
04024 cAMP signaling pathway
100410387 (PTCH1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
100410387 (PTCH1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100410387 (PTCH1)
05205 Proteoglycans in cancer
100410387 (PTCH1)
09162 Cancer: specific types
05217 Basal cell carcinoma
100410387 (PTCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
100410387
NCBI-ProteinID:
XP_035156709
Ensembl:
ENSCJAG00000021318
LinkDB
All DBs
Position
1:complement(78104539..78175572)
Genome browser
AA seq
1449 aa
AA seq
DB search
MASAGNAAEPQDRGGGGGCIGAPGRPAGGGRRRRTGGLRRAAAPDLDYLHRPSYCDAAFA
LEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANL
ETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEDANVLTTEALLQHLDS
ALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKL
QSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPAD
PDCPTTAPNKNSTKPLDTALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLISAHALQ
TMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRTYVEVVHQSVAQNSTQKVLS
FTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSV
AAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECL
KRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLY
RREDRRLDIFCCFTSPCVSRVIQVEPQAYTDTHDSTCYSPPPPYSSHSFAHETQITMQST
VQLRTEYDPHTHVYYTTAEPRSEISVQPVTVTQDTLSCQSPESTSSTRDLLSQFSDSSLH
CLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIV
PRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHRSFSNVKYVMLEENKQLP
KMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQ
LTKQRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRL
RIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICNNYTSLGLSSYPNGYPFLFWEQY
IGLRHWLLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAV
PVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLA
GSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGLNRLPTPSPEPP
PSVVRFAVPPGPMHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGMGGPAHQVIVEATEN
PVFAHSTVVPPESRHHPRSNPRQQPHLDSGSLPPGQQGQQPRRNPPREGLWPPPYRPRRD
AFEISTEGHSGPSNRDRWGPRGTRSHNPRNPASTAMGSSMPGYCQPITTVTASASVTVAV
HPPPVPGPGRNPRGGLRPGYEGYPETDHGLFEDPHVPFHVRRERRDSKVEVIELQDVECE
ERPRGSSSN
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctggtaacgccgccgagccccaggaccgcggcggcggcggcggctgtatc
ggtgctccgggccggccggctggaggcgggaggcgcagacggaccgggggactgcgccgc
gccgccgcgccggacctggactatctgcaccggcccagctactgcgacgccgccttcgct
ctggagcagatttccaaggggaaggctactggccggaaagcgccgctgtggctgagagcg
aagtttcagagactcttatttaaactgggttgttacattcaaaaaaactgcggcaagttc
ttggttgtgggcctcctgatatttggggccttcgcggtgggattaaaggcagcgaacctc
gagaccaacgtagaggagctgtgggtggaagttggaggacgagtaagtcgtgaattaaat
tatactcgccagaagattggagaagaggctatgtttaatcctcaactcatgatacagacc
cctaaagaggaagatgctaatgtcctgaccacagaagcgctcttacaacacctggactcg
gcgctccaggccagccgtgtccacgtatacatgtacaacaggcagtggaaattggaacat
ctgtgttacaaatcaggagagcttatcacagaaacaggttacatggatcagataatagaa
tatctttacccttgtttgattattacacctttggactgcttctgggaaggggcgaaatta
cagtctgggacagcatacctcctaggtaaacctcctttgcggtggacaaacttcgaccct
ttggaattcttagaagagttaaagaaaataaactatcaagtggacagctgggaggaaatg
ctgaataaggctgaggttggtcatggctacatggaccgtccctgcctcaatccggccgat
ccagactgccccaccacagcccccaacaaaaattcaaccaaacctcttgatacggccctt
gttttgaatggtggatgtcatggcttatccagaaagtatatgcactggcaggaggaattg
attgtgggtggcacagtcaagaacagcactggaaagctcatcagcgcccacgccctgcag
accatgttccagttaatgactcccaagcaaatgtacgagcacttcaaggggtacgagtat
gtctcccacatcaactggaatgaggacaaggcagcagccatcctggaggcctggcagagg
acctatgtggaggtggttcatcagagtgtcgcacagaactccactcagaaggtgctttcc
ttcaccaccacaaccctggacgacatcctgaaatcattctctgacgtcagtgtcatccgt
gtggccagtggctacctactcatgctcgcctatgcctgtctaaccatgctgcgctgggac
tgctccaagtcccagggtgccgtggggctggctggcgtcctgctggttgcactgtcagtg
gctgcaggactgggcctgtgctcattgatcggaatttcctttaacgctgcaacaactcag
gttttgccatttctcgctcttggtgttggcgtggatgatgtatttcttctggcccacgcc
ttcagtgaaaccggacagaataaaagaatcccttttgaggacaggaccggggagtgcctg
aagcgcacaggagccagcgtggccctcacatccatcagcaacgtcacagccttcttcatg
gctgcattaatcccgattcccgctctgcgcgcgttctccctccaggcagcggtagtagtg
gtgttcaattttgccatggttctgctcatttttcctgcaattctcagcatggatttatat
cgacgtgaggacaggagactggatattttctgctgttttacaagcccctgcgtcagcaga
gtgattcaggttgaacctcaggcctacactgacacccatgacagtacctgctacagcccc
ccacccccctacagcagccacagctttgcccatgaaacgcagattaccatgcagtccact
gtccagctgcgcacagagtacgacccccacactcacgtgtactacaccaccgctgagcca
cgctccgagatctccgtgcagcccgtcaccgtgacacaggacaccctcagctgccagagc
ccagagagcaccagctccacaagggacctgctctcccagttctctgactccagcctccac
tgccttgagcccccctgtaccaagtggacactctcatcttttgctgagaagcactatgct
cctttcctcttgaaaccaaaagccaaggtagtggtgatcttcctttttctgggcttgctg
ggggtcagcctttacgggaccacccgagtgagagacgggctggaccttacggacattgta
cctcgggaaaccagagaatatgactttattgctgcacaattcaaatacttttctttctac
aacatgtatatagtcacccagaaagcagactacccgaatatccagcacttactttacgac
cttcacaggagcttcagtaacgtgaagtatgtcatgttggaagaaaacaaacagcttccc
aaaatgtggctgcactacttcagagactggctgcaaggacttcaggatgcatttgacagt
gactgggaaaccgggaaaatcatgccaaacaattacaagaatggatcagacgatggagtc
cttgcctacaaactcctggtgcagaccggcagccgcgataagcccatcgacatcagccag
ttgactaaacagcgtctggtggatgcagatggcatcattaatcccagcgctttctacatc
tacctgacggcttgggtcagcaacgaccccgtcgcgtatgctgcctcccaggccaacatc
cggcctcaccgaccagaatgggtacatgacaaagccgactacatgcccgaaaccaggctg
agaatcccggcagcagagcccatcgagtatgcccagttccctttctacctcaacggcttg
cgagacacctcagactttgtggaggcaattgaaaaagtgaggacgatctgtaacaactac
acgagcctggggctgtccagttaccccaacggctatcccttcctcttctgggagcagtac
atcggcctccgccactggctgctgctgttcatcagcgtggtgttggcctgcacgttcctc
gtgtgcgccgtcttccttctgaacccctggacggccgggatcattgtgatggtcctggcg
ctgatgacggtcgagctcttcggcatgatgggcctcattggaatcaagctcagcgctgtg
cccgtggtcatcctgatcgcctccgttggcataggagtggagttcactgttcacgttgct
ttggcctttctgacggccataggcgacaagaaccgcagggctgtgcttgccctggagcac
atgtttgcacctgtcctggatggcgctgtgtccactctgctgggagtgctcatgcttgcg
ggatctgagtttgacttcattgtcaggtatttcttcgctgtgctggcaatcctcaccatc
ctcggcgttctcaatgggctggttttgcttcccgtgcttttgtctttctttggaccatat
cctgaggtgtctccagccaacggcttgaaccgcctgcccacaccctcacctgagccaccc
cccagtgtggtcaggttcgccgtgccccccggtcccatgcacagcgggtctgattcctcc
gactcggagtatagttcccagacgacagtgtcaggcctcagtgaggagcttcggcactac
gaggcccagcagggcatgggaggccctgcccaccaagtgatcgtggaagccacagaaaac
cccgtctttgcccactctactgtggtccctcccgaatccaggcatcacccacgctcgaac
ccacgacagcaaccccacctggactcagggtccctgcctcctggacagcaaggccagcag
ccccgcaggaacccccccagagaaggcttgtggccacccccctatagaccgcgcagagac
gcttttgaaatttctactgaagggcattctggccctagcaatagggaccgctggggcccc
cgcgggacccgttctcacaaccctcggaacccagcgtccactgccatgggcagctccatg
cccggctactgccagcccatcaccactgtgacggcttctgcctccgtgactgttgctgtg
cacccgccacctgttcctgggcctgggcggaacccccgaggggggctccgcccaggctac
gaaggctaccctgagactgaccacggcctgttcgaggacccccacgtgcctttccacgtc
cggcgtgaaaggagggattcaaaggtggaagtcattgagctgcaggacgtggagtgtgag
gagaggccccggggaagcagctccaactga
DBGET
integrated database retrieval system
