KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100414028Help
Entry
100414028         CDS       T03264                                 

Gene name
HDAC6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc05034  Alcoholism
cjc05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09160 Human Diseases
  09161 Cancers: Overview
   05203 Viral carcinogenesis
    100414028 (HDAC6)
  09165 Substance dependence
   05034 Alcoholism
    100414028 (HDAC6)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:cjc01009]
    100414028 (HDAC6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjc03019]
    100414028 (HDAC6)
   04131 Membrane trafficking [BR:cjc04131]
    100414028 (HDAC6)
   03036 Chromosome and associated proteins [BR:cjc03036]
    100414028 (HDAC6)
Enzymes [BR:cjc01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     100414028 (HDAC6)
Protein phosphatases and associated proteins [BR:cjc01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100414028 (HDAC6)
Messenger RNA biogenesis [BR:cjc03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     100414028 (HDAC6)
Membrane trafficking [BR:cjc04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    100414028 (HDAC6)
Chromosome and associated proteins [BR:cjc03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     100414028 (HDAC6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 100414028
NCBI-ProteinID: XP_017824154
Ensembl: ENSCJAG00000002395
LinkDB All DBs
Position
X
AA seq 1254 aa AA seqDB search
MEKKGPDTRVPTGRQELGGASQGRSLRKGLRPNRDRGKASSAMTSTGQDSTTTRQRRSRQ
NPQSSPQDSSVTSKRNIKKGAVPRSIPNLAEVKKKGKMKKLGQAIEEDLIVGLQGMDLNL
EAEALAGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARFAEK
EELMLVHSLEYIDLMETTQYMKEGELRVLADTYDSVYLHPNSYSCACLATGSVLRLVDAV
LGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKHRIQRVLIVDWDVHHGQ
GTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTIGFGQGQGYTINVPWNQVGMRDAD
YIAAFLHVLLPVTLEFQPQLVVVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGLAGGKL
ILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGAPCRSAQASVSCALEALEPFWEVL
VRSTDTVEGDNVEEDNIEESEDERPWEPPVLPILTWPVLQSRTGLVYDQSMMNHCNLWDS
HHPEVPQRILRIMCRLEELGLAGRCLTLPPRPATEAELFTCHSAEYVARLRATEKMKTRE
LHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPGHHAEQDAAC
GFCFFNSVAVAARHAQAISGHALRILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDHGT
FFPMGDEGASSQIGRAAGTGFTVNVAWNGPRIGDADYLAAWHRLVLPIAYEFNPELVLVS
AGFDAARGDPLGGCQISPEGYAHLTHLLMGLASGRIILILEGGYNLTSISESMAACTRSL
LGDPPPLLTLPRPPLSGALASITETIQVHRRYWRSLRVMKVEDKEGPSSSKLITKKAPQP
AKPMLAERMITREKKVLEASMGKVISVSGEESTPDQVKSETAVVAVTQDQSSKAATGGAT
LAQTVSKAATGGAMLGQTISEEAVGGATQDQTTSEETVGGATLDQTTSEDAVRGATLGQT
TSEAVGASLAQTTSEAAMEGATLDQTTSEEALGGTELIQTPLTLSTDHQTPPTSPVRGTT
PQISPSTLIGSLRTLELGSESQGALESQAPGEENLLGEAAGGQDMADSMLMQESKGLTDQ
AIFYAVTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINAHM
LRHHGNSGHPLVLSYVDLSTWCYYCQAYVHHQALLDVKNIAHQNKFGEDIPHPS
NT seq 3765 nt NT seq  +upstreamnt  +downstreamnt
atggaaaagaaaggcccggacactcgcgtccccacgggtcgccaggaacttggcggagcg
agccaagggcggagtttgagaaaggggttgcgcccgaaccgagacaggggcaaagcctcc
tcagctatgacctcaaccggccaggattccaccacaaccaggcagcgaagaagtaggcag
aacccccagtcgtctcctcaggactccagtgtcacatcgaagcgaaacattaaaaaggga
gccgttccccgctccatccccaatctagcggaggtaaagaagaaaggcaaaatgaagaag
ctcggccaagcaatcgaagaagacctaatcgtgggactgcaggggatggatctgaacctt
gaggctgaagcactggctggcactggcttggtgttggatgagcagctaaacgaattccat
tgcctctgggatgacagcttcccggaaggccctgagcggctccatgccatcaaggagcaa
ctgatccaagagggcctcctagatcgctgtgtgtcctttcaggccaggtttgctgaaaag
gaagagctgatgttggttcacagcctagaatatattgatctgatggaaacaacccagtac
atgaaggagggagaactccgcgtcctagcagacacctatgactcagtttatcttcatccg
aactcatactcctgtgcctgcctggccactggttctgtcctcaggctggtggatgcggtc
ctaggggctgaaatccggaatggcatggccatcattaggcctcctggacatcatgcccaa
cacagtcttatggatggctattgcatgttcaaccacgtggctgtggcagcccgctatgct
caacagaaacaccgcatccagagggtccttatcgtggattgggatgtgcatcatggtcaa
ggaacacagttcaccttcgaccaggaccccagtgtcctctatttctccatccaccgctac
gagcagggtaggttctggccccacctgaaggcctctaactggtccaccataggttttggc
caaggccaaggatataccatcaatgtgccttggaaccaggtggggatgcgggatgctgac
tacattgctgctttcctacacgtcctgctgccagtcacccttgagttccagcctcagctg
gtcgtggtggctgctggatttgatgccctgcaaggggaccccaagggtgagatggccgcc
actccagcagggttcgcccagctaacccacctgctcatgggtctggcaggaggcaagctg
atcctgtctctggagggtggctacaacctccgcgccctggctgaaggcgtcagtgcttcg
cttcacacccttctgggagatccttgccccatgctggagtcccctggtgccccctgtcgg
agtgcccaggcttcagtctcctgtgctctggaagcccttgagcccttctgggaggttctt
gtgagatcaactgatactgtggaaggggacaacgtggaggaggacaatatagaggagagc
gaggatgaaagaccctgggagcccccagtgcttccaatcctgacatggccggtgctacag
tctcgcacagggctggtctatgaccaaagtatgatgaatcactgcaacttgtgggacagc
caccaccctgaggtaccccagcgcatcttgcgaatcatgtgccgtctggaggagctggga
cttgctgggcgctgcctcaccctgccaccgcgccccgccacagaggctgagctgttcacc
tgccacagtgctgagtatgtagctcgtctccgggccacagagaagatgaaaacccgggag
ctgcaccgggagagttccaactttgactccatctacatctgccccagcacctttgcctgt
gcacagcttgccactggcgctgcctgccgcctggtggaggctgtgctctcaggagaggtt
ctgaatggtgctgctgtggtgcgtcccccaggacaccatgcggagcaggacgcagcttgc
ggtttttgctttttcaactctgtggctgtggctgctcgccatgcccaggctatcagtggg
catgccctgcggatcctgatcgtggattgggatgtccaccatggtaatggaactcagcac
atgtttgaggatgaccccagtgtactctatgtgtccctgcaccgctacgatcatggcacc
ttcttccccatgggagatgagggtgccagcagccagatcggccgggctgcaggcacaggc
ttcaccgtcaacgtggcatggaatgggccccgcataggtgatgctgactacctagctgcc
tggcatcgcctggtgcttcctattgcctacgagtttaatccagaactggtgctggtctca
gctggctttgacgctgcacggggggacccgctggggggctgccagatatcacctgagggt
tatgcccacctcacccacctgctgatgggccttgccagtggccgcattatccttatccta
gagggtggctataacctgacatccatctcagagtccatggctgcctgtactcgctccctc
cttggagacccgccacccctgctgaccctgccacggcccccactctcaggggccctggcc
tcaatcactgagaccatccaagtccatcgcagatactggcgcagcttacgggtcatgaag
gtagaagacaaagaaggaccctccagttcgaagctgatcaccaagaaggcaccccaacca
gccaaacctatgttagctgagcggatgatcacacgagaaaagaaggttctggaagcaagc
atggggaaggtcatctcggtgtctggggaagagtccactccagaccaggttaagtcagag
acagctgtggtggcagtcactcaggaccagtcctcaaaggcagccacggggggagccaca
ctggcccagaccgtctccaaggcagccactgggggagccatgctgggccagaccatctca
gaggaggctgtcgggggagccactcaggaccagaccacctcagaggaaactgtgggagga
gccactctggaccagaccacctcagaggatgctgttaggggagccactctaggccagact
acctcagaggctgtaggagcctcactggcccagaccacctcagaggcagccatggaggga
gccacactggaccagactacgtcagaggaagctctagggggcaccgagctgatccaaact
cctctaaccttgagcacagaccaccagacccccccaacctcacctgtgcggggaactaca
ccccagatatctcccagtacattgattgggagtctcaggaccttggagctaggcagcgaa
tctcagggggccctagaatctcaagccccaggagaggagaacctactaggagaggcagct
ggaggtcaggacatggctgattcgatgctgatgcaagaatctaagggcctcactgatcag
gccatattttatgctgtgacaccactgccctggtgtccccatttggtggcagtatgcccc
atacctgcagcaggcctggatgtgacccaaccttgtggggactgtggaacaatccaagag
aattgggtgtgtctctcttgctatcaggtctactgtggtcgttatatcaatgcccacatg
ctccgacaccatggaaattctggacacccgctggtcctcagctacgttgacctgtcgacc
tggtgttactactgccaggcctatgtccaccaccaggctctcctagatgtgaagaacatc
gcccaccagaacaagtttggggaggatattccccacccatcctaa

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