KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100415094Help
Entry
100415094         CDS       T03264                                 

Gene name
LIG1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03030  DNA replication
cjc03410  Base excision repair
cjc03420  Nucleotide excision repair
cjc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cjc00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    100415094 (LIG1)
   03410 Base excision repair
    100415094 (LIG1)
   03420 Nucleotide excision repair
    100415094 (LIG1)
   03430 Mismatch repair
    100415094 (LIG1)
Enzymes [BR:cjc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100415094 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     100415094 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     100415094 (LIG1)
DNA replication proteins [BR:cjc03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    100415094 (LIG1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     100415094 (LIG1)
DNA repair and recombination proteins [BR:cjc03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     100415094 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     100415094 (LIG1)
   MMR (mismatch exicision repair)
    Other MMR factors
     100415094 (LIG1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR Presenilin
Motif
Other DBs
NCBI-GeneID: 100415094
NCBI-ProteinID: XP_008986565
Ensembl: ENSCJAG00000000504
LinkDB All DBs
Position
22
AA seq 919 aa AA seqDB search
MQRSIMSFFHPKKEGKVKKPEKEASNSSRETEPPPKVALKEWNGVVSESDSPVKRPGRKA
ARVLGSEGEEEDEDLSPAKGQKPAPDCPQVSPPRPATSPESNPSLSDTSPMDSSPSGIPK
RRTARKQLPKRTIEEVLEEENADKDREAKRKKEEEEAETPKENLTEAEVATEKEREDGDQ
PTVPPKPLKTSEAETPMESISEPEVAMRQELQDEEEQAKPPRRAPKTLSNFFTPRKPAIK
KEVKEEEPGALGKEGAEGPLEPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEE
VSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNQLGPPQQGLELGVGDGVLLKAVAQA
TGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFTKFRDIARLTGSASTA
KKIDIIKALFVACRHSEARYIARSLSGRLRLGLAEQSVLAALSQAMSLTPPGQEFPLAVV
DAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCKLNPGIPLK
PMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALESGEVKIFSRNQEDNTGKYPDI
ISRIPRIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFD
LIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCEG
LMVKTLDVDATYEIAKRSHNWLKMKKDYLSGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA
CYDEDSEELQAICKLGTGFSDEELEAHHQSLQALVLPSPRPYVRIDDAVTPDHWLDPSAV
WEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQS
QIQNQQGEEDTGSDPEDTY
NT seq 2760 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggtaaagtgaagaaacct
gagaaggaggcatccaacagcagcagagagacggagccccctccgaaggtggcactgaag
gagtggaatggagtggtgtccgagagtgactctccagtgaagaggccagggaggaaggcg
gcccgggtcctgggcagtgaaggggaagaggaggatgaagaccttagccctgccaaaggc
cagaagcctgcccccgactgcccacaggtctcccctccccgccctgctacatctcctgag
agcaacccttccctctccgacacctctcccatggacagctccccctcagggatcccgaag
cgtcgcacagctcggaagcagctcccaaaacggaccattgaggaagtcctggaagaggag
aatgcagacaaggacagagaagccaagaggaagaaggaggaggaagaagcagagaccccg
aaagaaaatctcacagaggctgaagtagcaacagagaaggaaagagaagatggggaccag
cccactgtgcctcccaaacccctgaagacatctgaagcagagaccccgatggaaagcatt
tcagagcctgaggtggccatgagacaggagctgcaggacgaggaggagcaggccaagcct
ccccgcagagctcccaagacgctcagcaacttcttcaccccccggaagccagcaatcaaa
aaagaagtgaaagaagaggagccgggggctctgggaaaggagggagctgagggacccctg
gagccatccggttacaatcctgccaagaacaactaccatcccgtggaagacgcctgctgg
aaaccgggccagaaggtcccttacctggcggtggcccggacatttgagaagatcgaggag
gtgtctgctcggctgcggatggtggagacgctgagcaacttgctgcgctccgtggtggcc
ctgtcgcccccggacctcctccctgtcctctacctcagcctcaaccagcttgggccaccc
cagcagggcctggagcttggcgtgggtgatggcgtacttctcaaggcagtggcacaggcc
acaggtcggcagctggagtctgtccgggctgaggcagccgagaagggtgacgtggggctg
gtggccgagaatagccgcagcacccagaggctcatgctgccacctcctccgctcactgcc
tccggggtcttcaccaagttccgagacatcgccaggctcactggcagtgcttccacagcc
aagaagatagacatcatcaaagccctctttgttgcctgccgccactcagaagcccggtac
atcgccaggtccctgagcggacggctgcgccttgggctagcagagcagtcggtgctggcc
gccctctcccaggccatgagcctcacacccccaggccaagaattcccactggccgtggtg
gatgctggaaagggcaagacagcagaggcccgaaagacgtggctggaggagcaaggcatg
atcctgaagcagacgttctgtgaggtgcctgacctggaccgaattgtccccgtgctgctg
gagcatggcctggaacgtctgccggagcactgcaagctaaacccagggattcccctgaaa
ccaatgttggcccatcccacgcggggtgtcagtgaggtcctgaagcgctttgaggaggca
gctttcacctgcgagtacaaatatgacgggcagagggcacagatccacgctctggaaagc
ggggaggtgaagatcttcagcaggaatcaggaagacaacactgggaagtacccggacatc
atcagccgcatccccaggatcaaactcccatcggtcacatccttcatcctggacgccgaa
gctgtggcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacccgc
aaacgcaaggaggtggatgcgtctgagatccaggtgcaggtgtgtttgtacgccttcgac
ctcatctacctcaacggagagtccctggtacgtgagcccctttcccgacgccggcagctg
ctccgggagaactttgtggagacagagggcgagttcgtcttcgccacctccctggacacc
aaggacgtcgagcagatcgccgagttcctggagcagtcggtgaaagactcctgcgagggg
ctaatggtgaagaccctggatgtcgatgccacctatgagattgccaagagatcgcacaac
tggcttaagatgaagaaggactacctcagtggcgtgggcgacactctggacctggtggtg
attggtgcctacctgggccgggggaagcgtgccggccgatacgggggcttcctgctcgcc
tgctacgatgaggacagtgaggagctacaggccatatgcaagcttggaactggcttcagc
gacgaggagctagaggcgcatcaccagagcctgcaggccctggtgctgcccagcccacgc
ccctacgtgcggatagatgacgctgtgactcccgaccactggctggaccccagcgccgtg
tgggaggtgaagtgcgctgacctctccctctcccccatctaccctgctgctcggggcctg
gtggatagtgacaagggcatctcccttcggttccctcggttcattcgagtccgtgaagac
aagcagccggagcaggcgaccaccagtgcccaggtggcctgtctgtaccggaagcaaagt
cagattcagaaccagcaaggcgaggaggacacaggctctgaccctgaagatacgtattaa

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