KEGG   Coturnix japonica (Japanese quail): 107307952Help
Entry
107307952         CDS       T04297                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
cjo  Coturnix japonica (Japanese quail)
Pathway
cjo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    107307952 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cjo03400]
    107307952 (LIG4)
Enzymes [BR:cjo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107307952 (LIG4)
DNA repair and recombination proteins [BR:cjo03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     107307952 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme SKA1 DUF2922 APG17
Motif
Other DBs
NCBI-GeneID: 107307952
NCBI-ProteinID: XP_015706934
LinkDB All DBs
Position
1
AA seq 912 aa AA seqDB search
MASVPTSQPSPKRTVASHVPFADLCSTLERIQMCKSRPEKTKYFKDFLDSWRKFHSALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDALKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKRGRLTVEQVNELLDAIANNNAAKNKGLVKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHSVFKSDIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMINDQKLGHESLSKRYKILNNVFTPVTGRIHVVHKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPP
CNILCGTEKPEMYIEPCNSVIVQVKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
LDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKRKTVPKVKKVIGIAEQFKAPDLSNVNKV
SNVFEDVEFCVMTGMGRYSKSELESRIAECGGSVVQNPGPDTYCVIVGAENVRVKNIIAS
NKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTADTDVAQLK
EVFSRVKDNKKMPLDLIAELEERYSWSSCQQCMFRGNTIYVDYYAIINKPSTKIHGTRLS
IRALELRFYGAKVVPLLEEGVSHVLIGEDHSRVKEMKAIRRMFGKKFKIVSELWVTESVK
EGVLKNENQFLI
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atggcttctgtacccacatctcaaccttctcctaaaagaacagtggcctcgcacgtgcct
tttgcagacctgtgttccaccctggagcgaatacagatgtgtaaatcccggccagagaaa
accaagtacttcaaggatttcttggattcctggaggaaattccacagtgctctccatcaa
aaagagaaagatgtcaccgattctttctatcctgctatgcggcttattcttccgcagctg
gaaagggaaaggatggcgtatggaattaaggaaaccatgcttgcaaagctgtacatcgag
ctgcttaatttaccaaaagatggaaaggatgctctgaaacttttaaattacagaacaccc
actggttcacgtggagatgctggagactttgctatgatcgcatactttgtgttaaaaccc
cgaagccctaagcgaggcaggttgactgtagagcaggtcaatgaactgctggatgctatt
gcaaacaacaatgctgctaagaacaagggactggtaaagaaaagccttcttcagttaatt
acccaaagcacagcacttgagcaaaagtggctcatccggatgattataaaggatctaaaa
cttggtgttagccaacaaacaatattttcaatttttcatcctgatgctgctgaactacac
aatgttacaacggacttggaaaaagtttgtaggcagctgcatgacccctctgtctcgctt
agtgatgtttctatcatgttattttctgcctttaagccaatgctcgctgctattgccgat
gtccagcaaattgagaagcagatgaataaccaggtattctacatagaaactaaactggat
ggcgaacgtatgcagatgcacaaagatggtgatgtgtataagtatttttccagaaatggg
tttgactatactcagcagtttggtgcttctccccttgatggctcattaacaccatttatt
catagtgtatttaaaagcgatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaaacacaaacctttatgcaaaaaggaaacaaatttgacatcaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtgtttgatgtgttaatgataaatgatcag
aagttgggtcatgaatccctgagcaaaagatacaagatcttaaataatgtatttacccca
gtaacaggcaggatacatgttgtacataaaaaaagtgccaggacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtaaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagagtatgtc
aatgggctgatggatgagctagatcttcttattgttggtggatactggggaaaaggctca
cgtggtggaatgatgtctcactttctgtgtgctattgcagaaactccagctccaaatgaa
aaacctactgttttccactctatttgtcgtgttggctctggctacactatgaaggaatta
tatgatctgggtttgaaactggctaaacactggaagccttacaataggaaggaccctcct
tgtaacattttgtgtggcactgagaaacctgaaatgtacattgagccttgcaactctgtc
atagttcaggtcaaggcagctgagattgttaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgaaaaaataagagaggacaaagaatggtatgaatgcatgact
ttggacatgctagaacatcttagaagcagagcagaagggaagctggcatccaagcaccta
tatattgatgaatatgatgagccgcaagagaagaaaaggaaaactgtaccaaaggtgaag
aaggtaattggaatagctgagcagtttaaagctcctgatctttctaatgtcaacaaagtt
tccaatgtgtttgaggatgtagaattttgtgttatgacaggaatgggaaggtactccaag
tctgaactggaaagcagaatagctgaatgtggtggcagtgtggtacagaaccctggacct
gacacttactgtgtcattgtaggagctgagaatgtcagagttaaaaacatcattgcttcc
aacaaatatgatgtggtgaaagcagagtggcttcttcagtgttttcagtccaaaatgctg
gtaccttggcagccagcctttatgattcacatgtctcctgacacaagagaacattttgct
cgtgagtatgattgctatggagacagctacacagcagatacagatgttgcacaactcaag
gaagtgttctcaagagtgaaggataataagaagatgcctttggacttgattgctgagtta
gaagagcggtattcatggagcagctgtcaacagtgtatgttcagaggaaacactatttat
gtggactactatgctataattaacaagcccagtaccaaaatccatggcacaagactatca
attagagctttggagctccgtttttatggtgcaaaagtagttcctcttcttgaggaaggt
gtgtcccatgttcttataggagaagatcattcccgggtaaaagagatgaaagctatcagg
agaatgtttgggaaaaaatttaaaatcgtgtcggagctgtgggtaacagagtcagttaag
gaaggggtcctaaagaatgaaaatcagttcttaatttaa

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